PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g024770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 309aa    MW: 34394 Da    PI: 5.8872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g024770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-1262103346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T eE++l+++ ++ +G++ W +Ia++++ g+t++++k +w++
   Csa17g024770.1  62 SFTSEEEDLIIKMHAAMGSR-WQLIAQHLP-GKTEEEVKMFWNT 103
                      79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.74E-1342112IPR009057Homeodomain-like
PROSITE profilePS5129417.24555109IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-1757109IPR009057Homeodomain-like
SMARTSM007171.9E-1359107IPR001005SANT/Myb domain
CDDcd001677.21E-1062105No hitNo description
PfamPF002492.2E-1162103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVRSCSSKSK NPWANEEDTT QKFVFASASK NGSAAPKKIG LRRCGKSCRV RKTDHSGTKH  60
ESFTSEEEDL IIKMHAAMGS RWQLIAQHLP GKTEEEVKMF WNTKLKKKLS EMGIDHVTHR  120
PFSHVLAEYG NINGGGNLNP NPSNQGAPLG RNHSLNEDTH QQQPDDSGDL MFHLQAIKLM  180
TESSNQVKPE STFVYASSSS SNSSPPLFSS TCSTIAQENS EVNFTWSDFL LDQENFHENQ  240
QNHNPQELDN LFGNDFSEVA AATMPNTLTI ASQFEEESSS NGFVESILAK EKELFLGFPS  300
YLENPFHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-12101097108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00148DAPTransfer from AT1G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g024770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934660.0AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477097.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A178WJ390.0A0A178WJ39_ARATH; Uncharacterized protein
STRINGXP_010477099.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148221518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18960.11e-173MYB_related family protein