PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g024520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 30319 Da PI: 6.3197 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++lv +++++G +W++ + + g++R++k+c++rw++yl Csa17g024520.1 14 RGEWTAEEDQKLVAYINEHGICDWRSLPIRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++E+e ++++++ G++ W++Iar m +Rt++++k++w++ Csa17g024520.1 67 RGKFTPQEEEDIIRLHAAVGNR-WAAIARQMK-NRTDNDIKNHWNSC 111 89********************.********9.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.067 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.97E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.10E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.966 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-8 | 69 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGRTTWFDVD GMKRGEWTAE EDQKLVAYIN EHGICDWRSL PIRAGLKRCG KSCRLRWLNY 60 LRPGIRRGKF TPQEEEDIIR LHAAVGNRWA AIARQMKNRT DNDIKNHWNS CLKKRLSRKG 120 IDPMTHEPII KHLTVKTTNE DSCSTSTTTS PSTESSPSSG SARLLNKLAA GISSRQHSLD 180 RIKYILSNPI VRSSDQVNEK EEERESNMDQ KIDGVEEEDD IQTWDEEEVR RLMEVDVMDY 240 EMTSYDSVMY ESTHVLDHLF LT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 9 | 116 | 2 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan gene activation and in indole-3-acetic acid (IAA) and indolic glucosinolates (IG) biosynthesis. Acts as a direct transcriptional activator of both Trp synthesis genes and Trp secondary metabolism genes. {ECO:0000269|PubMed:15579661, ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862, ECO:0000269|PubMed:9576939}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g024520.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by herbivory. {ECO:0000269|PubMed:23943862}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065166 | 0.0 | AY065166.1 Arabidopsis thaliana Putative MYB47 transcription factor (F6a14.18) mRNA, complete cds. | |||
GenBank | AY114579 | 0.0 | AY114579.1 Arabidopsis thaliana Putative MYB47 transcription factor (At1g18710) mRNA, complete cds. | |||
GenBank | AY519556 | 0.0 | AY519556.1 Arabidopsis thaliana MYB transcription factor (At1g18710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477066.1 | 0.0 | PREDICTED: transcription factor MYB34-like | ||||
Swissprot | O64399 | 6e-59 | MYB34_ARATH; Transcription factor MYB34 | ||||
TrEMBL | D7KH58 | 1e-148 | D7KH58_ARALL; AtMYB47 | ||||
STRING | XP_010477066.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18710.1 | 1e-140 | myb domain protein 47 |