PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g023030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24398 Da    PI: 9.8167
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g023030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.72.4e-2153101149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                     k i+++s+rqvtfskRr g++KK  ELSvL++a++avi fs  g++y +
  Csa17g023030.1  53 KEIKEESKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSRCGRIYRF 101
                     689*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-2345104IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.20745105IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-2246119IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-184767IPR002100Transcription factor, MADS-box
PfamPF003199.8E-2155101IPR002100Transcription factor, MADS-box
CDDcd001204.62E-1959103No hitNo description
PRINTSPR004041.4E-186782IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-1882103IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEEERETSSS MTCVTTSKDP LQTPNMSVSK PKKETTAQTT PKTTRGRQKI EIKEIKEESK  60
RQVTFSKRRR GLFKKSAELS VLTGAKIAVI TFSRCGRIYR FGHVDALIDK YLRKIPVKLE  120
GYAGNNAAEE EGRRPWWERP VESVPEEELE DYVAALSVFR ENLGKKIMAM SNDRPVEIVP  180
AWPINMMGWK PTMDMQNLEN LTDGITRCRV GQNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g023030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476875.11e-158PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLR0I8U31e-117R0I8U3_9BRAS; Uncharacterized protein
STRINGXP_010476875.11e-158(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.14e-79M-type_MADS family protein