PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa17g022850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 157aa MW: 18624.9 Da PI: 10.3004 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 69.2 | 5.7e-22 | 31 | 76 | 2 | 47 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 +k++s e +s yF++ i++AAke++++lT+LK++CR++GI+RWPhR Csa17g022850.1 31 SKTLSKEIISLYFYMLITQAAKEVNIGLTLLKKRCRELGIQRWPHR 76 5899*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 13.856 | 12 | 103 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.0E-16 | 33 | 76 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
MLDLDLEKKS ETISTKKRRC REECVSSCSV SKTLSKEIIS LYFYMLITQA AKEVNIGLTL 60 LKKRCRELGI QRWPHRPAED GRGRKRRQAK KRFGKAREGE ETIEKLPDLK FEDKTKRLRQ 120 ACFKANHKWN LEEKTWHVHI HHIIIFFFLF LCFVCE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa17g022850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC011809 | 2e-70 | AC011809.2 Arabidopsis thaliana chromosome I BAC F6A14 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 2e-70 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010501518.1 | 6e-60 | PREDICTED: protein RKD1-like | ||||
Swissprot | Q9M9U9 | 1e-46 | RKD1_ARATH; Protein RKD1 | ||||
TrEMBL | R0IJY6 | 2e-49 | R0IJY6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010501518.1 | 2e-59 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18790.1 | 2e-38 | RWP-RK domain-containing protein |