PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g020170.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BBR-BPC

Protein Properties

Length: 291aa MW: 32399.5 Da PI: 10.2699

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g020170.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	362.7	7.1e-111	1	290	1	301
GAGA_bind 1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd.....maflqrdkalaernkalverdnkllall 85 mdddg+ rn+gyyepa a++k nlglqlms+i +r++k+ r+ nl ++++++++++++ m++ +++++ +++k++++l Csa17g020170.1 1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MIGPNGSYHHQEpppihMSY----NWINQ-------QKDKFFNML 80 9999..9***999**********.9**********.********99999999....*.......899**** PP GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqq.lse...pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskk 176 +v++s p++ +vl++t+s+ s+q+ l++ +q+e+++v +l+ e ++++k++k+++k +++++k+kk +k+k++++++++ Csa17g020170.1 81 PVTTS-----PNYGNVLPETSSAPSMQMnLHHhhhHQTEENPVV--------KLEDEVVNQTNKKRKTNSKAGSGTTTKAKKPRKPKDENSNNNN 162 9997.....99*************5333223333333333........2222222344455555555667777777777777777666555 PP GAGA_bind 177 kvkkesad...erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkkl 268 ++++++++ +r+k kks+d+v+ngvs+D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKmSqgafkk+ Csa17g020170.1 163 NNNNNNTNnnvSRVKPAKKSVDMVINGVSMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKV 257 54444433224789***************************************************************************** PP GAGA_bind 269 LekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 LekLa++G++++np+DLk+hWA+HGtnkfvtir Csa17g020170.1 258 LEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 290 ******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	6.3E-101	1	290	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	2.9E-168	1	290	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMIGP NGSYHHQEPP 60 PIHMSYNWIN QQKDKFFNML PVTTSPNYGN VLPETSSAPS MQMNLHHHHH HQTEENPVVK 120 LEDEVVNQTN KKRKTNSKAG SGTTTKAKKP RKPKDENSNN NNNNNNNNTN NNVSRVKPAK 180 KSVDMVINGV SMDISGLPVP VCTCTGAPQQ CYRWGCGGWQ SACCTTNISM HPLPMSTKRR 240 GARISGRKMS QGAFKKVLEK LASDGFNFGN PIDLKSHWAR HGTNKFVTIR *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g020170.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006917	0.0	AC006917.6 Genomic sequence for Arabidopsis thaliana BAC F10B6 from chromosome I, complete sequence.
GenBank	AC010657	0.0	AC010657.3 Genomic sequence for Arabidopsis thaliana BAC T5E21 from chromosome I, complete sequence.
GenBank	AY058073	0.0	AY058073.1 Arabidopsis thaliana At1g14680/F10B6_22 mRNA, complete cds.
GenBank	AY090305	0.0	AY090305.1 Arabidopsis thaliana At1g14680/F10B6_22 mRNA, complete cds.
GenBank	AY380568	0.0	AY380568.1 Arabidopsis thaliana basic pentacysteine 2 (BPC2) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010476533.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X2
Swissprot	Q9LDE2	1e-176	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A1J3JLW8	0.0	A0A1J3JLW8_NOCCA; Protein BASIC PENTACYSTEINE2
STRING	XP_010476532.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2893	27	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-169	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]