PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g019860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 319aa    MW: 36164.6 Da    PI: 7.6142
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g019860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.43.1e-3289144359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                      ++YkeClkNhAa++Gg+a+DGCgEfmps ge+g+++al+C+AC+CHRnFHR+eve 
  Csa17g019860.1  89 MIKYKECLKNHAAAMGGNATDGCGEFMPS-GEDGSIEALTCSACNCHRNFHRKEVEG 144
                     689*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-3190153IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2890142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-3191142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.43692141IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.35E-19210281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-29213282IPR009057Homeodomain-like
TIGRFAMsTIGR015654.9E-27220276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEIASQEDHD MPIPLNTTFG GGSNGSHGHM IHHHHELHAP NSAPPTHNNI TTQPPQMTLH  60
GNGHGNNYDH HHQQDPHHVS YNAIIKKPMI KYKECLKNHA AAMGGNATDG CGEFMPSGED  120
GSIEALTCSA CNCHRNFHRK EVEGEPVATA MSPYHQPPPP RKLMLNHHKI RSAMPHQMIM  180
PIGVSNYRYM HNNSESEDFM EEDGITTASR SLPHPPYNQK KRFRTKFTPE QKEKMLNFAE  240
KVGWKIQRQE DCVVQRFCEE IGVKRRVLKV WMHNNKLHFS KKNNNSNINL EDNDNEKSNN  300
LNNVDLSANN DIITKIVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232212761873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g019860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0742660.0AY074266.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds.
GenBankAY0967380.0AY096738.1 Arabidopsis thaliana unknown protein (At1g14440) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF14L170.0AC012188.2 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476498.10.0PREDICTED: zinc-finger homeodomain protein 4
RefseqXP_010476499.10.0PREDICTED: zinc-finger homeodomain protein 4
SwissprotQ9M9S00.0ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLD7KBK30.0D7KBK3_ARALL; ATHB31
STRINGXP_010476498.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33392665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-162homeobox protein 31