PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g018900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 199aa MW: 23075.2 Da PI: 5.8965

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g018900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.7	2.5e-13	88	138	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +++rr+++NRe+ArrsR RK+ ++eL v L + N+ L+++l++ ++ Csa17g018900.1 88 RKQRRMISNRESARRSRMRKQRHLDELWSQVIRLRSDNHCLIDKLNRVSES 138 79*******************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-13	84	148	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.3E-11	86	138	No hit	No description
PROSITE profile	PS50217	10.185	86	138	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.8E-11	88	140	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.66E-12	88	137	No hit	No description
CDD	cd14702	1.76E-17	89	139	No hit	No description
PROSITE pattern	PS00036	0	91	106	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MNHTVPAELS GYFHYLTPDK YNSQTSIMES EYFNMPSSPT SSSSFYHLNG LINNNNNYSS 60 SSNGQDLVTS NNSTSDEDHQ QSMIIDERKQ RRMISNRESA RRSRMRKQRH LDELWSQVIR 120 LRSDNHCLID KLNRVSESHE LALKENAKLK EETSDLRQLI SDIKSNNEDD NSFLRELEDS 180 ISNSRSDSNQ RCRDFELC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	100	107	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g018900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC027134	0.0	AC027134.4 Arabidopsis thaliana chromosome I BAC F13B4 genomic sequence, complete sequence.
GenBank	AF332430	0.0	AF332430.1 Arabidopsis thaliana clone C00105 (e) putative bZIP transcription factor (At1g13600) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F21F23	0.0	AC027656.4 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010476364.1	1e-142	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	1e-35	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A178WP44	1e-118	A0A178WP44_ARATH; BZIP58
TrEMBL	Q9LMY8	1e-118	Q9LMY8_ARATH; Basic leucine-zipper 58
STRING	XP_010476364.1	1e-142	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	1e-115	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]