PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g018620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 302aa    MW: 34318.8 Da    PI: 6.7083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g018620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05100119120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C+k+F+r  n++ H+
  Csa17g018620.1 100 FSCSVCNKTFNRFNNMQMHM 119
                     89*****************9 PP
2zf-C2H2110.0014185208123
                     EEET.TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                     ++C  +C k+F  + + ++H +++
  Csa17g018620.1 185 FRCRkKCEKTFAVRGDWRTHEKNC 208
                     89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-596122No hitNo description
PROSITE profilePS5015710.263100127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.6E-6100119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4171206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYNNNQYCIS GDEDSVVLSL GPPGQQYPNH NKPTSTKPSF NHEFDLPSTN PSGVTVALHI  60
GPPNSDKDIL TGGNNQDGTA RQGQYWIPTL SQILVGPTQF SCSVCNKTFN RFNNMQMHMW  120
GHGSQYRKGP ESLRGTKSSS SILRLPCYCC AEGCKNNIDH PRSKPLKDFR TLQTHYKRKH  180
GAKPFRCRKK CEKTFAVRGD WRTHEKNCGK LWFCVCGSDF KHKRSLKDHV RAFGDGHAAH  240
TIGDRVVSIG DAEEDEEEEE EEEEDDEEEE DAHEENVHGE KSYGIRYEQF RRYGQISDDH  300
Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g018620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118090.0AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476325.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX680.0ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLR0GPB20.0R0GPB2_9BRAS; Uncharacterized protein
STRINGXP_010476325.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.10.0C2H2-like zinc finger protein