PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g017170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 243aa    MW: 27066.8 Da    PI: 4.7443
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g017170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-172069255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++ a++++ g
  Csa17g017170.1 20 KYLGVRRRP-WGRYAAEIRNPTT---KERHWLGTFDTAEEAALAYDVAARSISG 69
                    799******.**********965...5**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-282076IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-202077IPR016177DNA-binding domain
CDDcd000183.60E-292076No hitNo description
PfamPF008473.7E-112068IPR001471AP2/ERF domain
PROSITE profilePS5103220.7192077IPR001471AP2/ERF domain
SMARTSM003802.7E-322083IPR001471AP2/ERF domain
PRINTSPR003678.7E-92132IPR001471AP2/ERF domain
PRINTSPR003678.7E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MLKSRNKSKS KQEKKSQEGK YLGVRRRPWG RYAAEIRNPT TKERHWLGTF DTAEEAALAY  60
DVAARSISGS LAKTNFFYTE NISSQTQPQQ LLQSSSDKGS VNPTIVSLGP EMSLESSSLS  120
FLQDQPPENH RFCDAPISSC LQEQQVLANL TNSFPHCYDD DHVGQSKEIC LPSFPSDMSS  180
SLFGYQDNTG EQSDAEQMKI GSVLSNDSHC FEYDYTATYV ESFLKDVNED PNQMFGSSSS  240
FI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2016841079Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g017170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934542e-99AB493454.1 Arabidopsis thaliana At1g12890 mRNA for hypothetical protein, partial cds, clone: RAAt1g12890.
GenBankCP0026842e-99CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF13K232e-99AC012187.3 Sequence of BAC F13K23 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476267.10.0PREDICTED: ethylene-responsive transcription factor ERF088-like isoform X1
SwissprotQ3E7031e-101ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLR0IIP71e-136R0IIP7_9BRAS; Uncharacterized protein
STRINGXP_010476267.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.12e-71ERF family protein