PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g016820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 395aa    MW: 44402.9 Da    PI: 5.1572
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g016820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.12.5e-142979155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    + y+G+r++    +Wv+e+r+p        +r++lg++ ta++Aa+a++ a ++l+g
  Csa17g016820.1 29 PVYRGIRRRN-GDKWVCEVREP-----IhqRRIWLGTYPTADMAARAHDVAVLALRG 79
                    68*****877.9******9997.....337*************************98 PP
2AP245.12.5e-14216266155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     + y+G+r++    +Wv+e+r+p        +r++lg++ ta++Aa+a++ a ++l+g
  Csa17g016820.1 216 PVYRGIRRRN-GDKWVCEVREP-----IhqRRIWLGTYPTADMAARAHDVAVLALRG 266
                     68*****877.9******9997.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-92979IPR001471AP2/ERF domain
PROSITE profilePS5103221.143087IPR001471AP2/ERF domain
SMARTSM003808.6E-213093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-263089IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-183089IPR016177DNA-binding domain
PRINTSPR003679.0E-73142IPR001471AP2/ERF domain
CDDcd000187.56E-243189No hitNo description
PRINTSPR003679.0E-75369IPR001471AP2/ERF domain
PfamPF008471.2E-9216266IPR001471AP2/ERF domain
SMARTSM003808.6E-21217280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-26217276IPR001471AP2/ERF domain
PROSITE profilePS5103221.14217274IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-18217276IPR016177DNA-binding domain
CDDcd000187.56E-24218276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MMNNDEIVLA EMRPKKRAGR RVFKETRHPV YRGIRRRNGD KWVCEVREPI HQRRIWLGTY  60
PTADMAARAH DVAVLALRGR SVCLNFADSA WRLPVPESNH PDVIRRAAAE AAEMFRPADF  120
GGGITVLPFS GDEVDLGSGS GSGSGSEELN SSSYGYGDYE EVSTTMMRLA EEPLMSPPRS  180
YMEEMTPNVY MEEEACYEDM PKKRAGRRVF KETRHPVYRG IRRRNGDKWV CEVREPIHQR  240
RIWLGTYPTA DMAARAHDVA VLALRGRSVC LNFADSAWRL PVPESNHPDV IRRAAAEAAE  300
MFRPADFGGG ITVLPFSGDE VDLGSGSGSG SGSEELNSSS YGYGDYEEVS TTMMRLAEEP  360
LMSPPRSYME EMTPNVYMEE EACYEDMSLW SYNY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g016820.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010476231.11e-127PREDICTED: dehydration-responsive element-binding protein 1F-like
SwissprotQ9LN861e-118DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLR0ID231e-120R0ID23_9BRAS; Uncharacterized protein
STRINGXP_010476231.11e-127(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.14e-97ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]