PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g014380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 442aa    MW: 50011.4 Da    PI: 7.2799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g014380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12263304854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ErrRRd+iN+a+  Lr ++Pk      +K++K+ i + Av+YIk+L
  Csa17g014380.1 263 SERRRRDKINQAMYALRAVVPKI-----TKMNKIGIFTDAVDYIKEL 304
                     6*********************7.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.9E-1411157IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.91E-12253309No hitNo description
SuperFamilySSF474594.71E-15254317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.358255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14258320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-13261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-10262304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MMMRNGERVK EFLRPFVVSK TWDLCVIWKL GDDPSRFIEW VGCCCSGGYV DTNIKLENAE  60
GTERKKKAFF CRDEHNKHHI RTLACESLSH FPLFMPLYPG IHGEVVMSKS PKWLVNSGPG  120
FKKDLFNTRV LVPVSDGLVE LFSFKMKPFD ETMVDMIVSR CNSVSEPFPE QSLQFRITPR  180
AEESMSSGVN LSGGGSSSVS NHSSETQTRF GNHPNGRCGD ISREEEAPCL VMNKDDPVVQ  240
NATDCNANKR LPKEHFKSKN LLSERRRRDK INQAMYALRA VVPKITKMNK IGIFTDAVDY  300
IKELLVEKKK LEDELKGINE KECKEIAAEE ESAIADPDAE KHSSKLDKKM KRNEVNLEVH  360
EIGERDFFIR VGQEHMRGGF NRLIEAVDSC GLEIINVNFT RHDLTAMTIL NVKANKDGIA  420
SGDLRDSLLK MMINQTIDMI T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268ERRRRD
2264269RRRRDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g014380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475937.10.0PREDICTED: transcription factor bHLH90-like
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLR0GTT20.0R0GTT2_9BRAS; Uncharacterized protein
STRINGXP_010475936.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein