PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g013790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-X1
Protein Properties Length: 1182aa    MW: 129278 Da    PI: 8.2457
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g013790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.61.1e-07375393119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C+++CH GpC+pC+
  Csa17g013790.1 375 CGRHQCERTCHVGPCDPCQ 393
                     ******************6 PP
2zf-NF-X117.78e-06439456118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CG+H C+  CH+GpC+ C
  Csa17g013790.1 439 CGNHFCSDVCHPGPCGDC 456
                     ****************99 PP
3zf-NF-X118.54.4e-06501515418
        zf-NF-X1   4 HkCqklCHeGpCppC 18 
                     H+C++ CH G+CppC
  Csa17g013790.1 501 HTCNEVCHAGDCPPC 515
                     *************** PP
4zf-NF-X118.54.3e-06596614119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  Csa17g013790.1 596 CGQHSCESLCHSGHCPPCL 614
                     ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.77E-6197268No hitNo description
PROSITE profilePS500169.009205266IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.583208264IPR001841Zinc finger, RING-type
PROSITE patternPS013590208263IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.37E-6297358No hitNo description
SMARTSM004380.023320338IPR000967Zinc finger, NF-X1-type
PfamPF014228.9322337IPR000967Zinc finger, NF-X1-type
CDDcd060081.31E-13365413No hitNo description
SMARTSM004385.3E-5375394IPR000967Zinc finger, NF-X1-type
PfamPF014229.2E-6375392IPR000967Zinc finger, NF-X1-type
CDDcd060081.66E-8433474No hitNo description
SMARTSM004386.1E-5439458IPR000967Zinc finger, NF-X1-type
PfamPF014228.8E-5439456IPR000967Zinc finger, NF-X1-type
CDDcd060084.69E-12488535No hitNo description
SMARTSM004384.9E-5498517IPR000967Zinc finger, NF-X1-type
PfamPF014221.6E-4500515IPR000967Zinc finger, NF-X1-type
CDDcd060081.30E-4547607No hitNo description
SMARTSM00438120557588IPR000967Zinc finger, NF-X1-type
PfamPF0142218557568IPR000967Zinc finger, NF-X1-type
CDDcd060086.06E-10586638No hitNo description
SMARTSM004382.0E-4596615IPR000967Zinc finger, NF-X1-type
PfamPF014221.1E-4596613IPR000967Zinc finger, NF-X1-type
CDDcd060088.17E-7643690No hitNo description
SMARTSM004380.079653671IPR000967Zinc finger, NF-X1-type
SMARTSM004380.031706736IPR000967Zinc finger, NF-X1-type
PfamPF014220.029706721IPR000967Zinc finger, NF-X1-type
CDDcd060082.60E-5734783No hitNo description
PfamPF0142212738764IPR000967Zinc finger, NF-X1-type
SMARTSM004380.016745766IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1182 aa     Download sequence    Send to blast
MSFQVRRDRN NGGDRSRNNS QQTWIPRNSS STSVVVPNEP TLFPNTDRNS ESRDAAVAAS  60
HPPYLQRQLN GSAPPPYNHQ QRSNNIGPRP HNRQRRNDAA GTLPVNHQHQ RSDYIGPPPP  120
NQQRRNDAAG ILPENQHQRG PPPPSRQRRN NVSGTLPDNR QRVSSRTRPV YQGKRVAKEE  180
DIVVMTDPNL PQLVQELQEK LVKSSIECMI CYDKVGRSAN IWSCSSCYSI FHMNCIKRWA  240
RAPTSIDLLA EKNQGDNWRC PGCQSVQLTS SKEISYRCFC GKRKDPPSDP YLTPHSCGEP  300
CGKPLEKEFA AAEITKEDLC PHVCVLQCHP GPCPPCKAFA PPRSCPCGKK MVTTRCSERR  360
SVLVCGQPCD KLLNCGRHQC ERTCHVGPCD PCQVLVNATC FCKKKMETVI CGDMNVKGEL  420
KAEDGVYSCS FNCGKPLGCG NHFCSDVCHP GPCGDCDLLP SRVKTCYCGK TRLEEQIRQS  480
CLDPIPSCSS VCRKLLPCKL HTCNEVCHAG DCPPCLVQVN EKCQCGSTSR AVECYITTSS  540
ETEKFVCAKP CGRKKNCGRH RCSQRCCPLM NGKKNDRSGD WDPHVCQIPC GKKLRCGQHS  600
CESLCHSGHC PPCLEMIFTD LTCACGRTSI PPPLPCGTPV PSCQHPCSIP QPCGHSATHG  660
CHFGDCPPCS APVEKKCVGG HVVLRNIPCG LKDIRCNKIC GKTRRCGMHA CARSCHPEPC  720
DSYNESEAGM RVTCGQKCGA PRRDCRHTCA ALCHPSAPCP DLRCEVPVTI TCSCGRISAT  780
VPCDAGGRSA NSSNVFSAAY DEASILQKLP APLQPVESSG NRIPLGQRKL SCDDECAKLE  840
RKRVLQDAFD ITPPNLEALH FSESSAMTEI ISDLYRRDPK WVLAVEERCK FLVLGKARGS  900
TSALKVHVFC PMQKDKRDTV RLIAERWKLG VSNAGWEPKR FTVVHVTAKS KPPTRIIGAR  960
GGAISIGGPH PPSFDPLVDM DPGLVVALLD LPREANISAL VLRFGGECEL VWLNDKNALA  1020
VFHDHARAAT AMRRLDHGSV YYGAVVVQTG GQSSSHSNAW GKLPGGSAWD VHKGNPWKKA  1080
ESDDSWGAED SPIGGSSRDI QASALRSAKS NNPIATSVNR WSVLEPEKAS STSSLEPITQ  1140
PQIEESSSSK AADKQPVEGS GEEVVDDWEK VVQMCMRVRL L*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g013790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475878.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1 isoform X1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1P8AVZ20.0A0A1P8AVZ2_ARATH; NF-X-like 1
STRINGXP_010475879.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1