PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g010900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 765aa    MW: 85253.4 Da    PI: 5.4799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g010900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.81.1e-1143897591373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P+ k + 
  Csa17g010900.1 389 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYQTYMSVCPFKKAAI 480
                     5789**************************************************************9999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN+ +++ +++++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+n+ +a+++e+
  Csa17g010900.1 481 IFANHSLMRFTANANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGNRLARYCQRHNVPFEYNA-IAQKWET 574
                     ********************************************************99*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L++++gE +aVn+ ++ ++llde+v ++s+rd+vLkl+++++P+v++ +    ++n++ F++rf eal +ysa++d+ ++kl re+e r 
  Csa17g010900.1 575 IKVEDLKLRQGEFVAVNSLFRFKNLLDETVLVNSPRDAVLKLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYSAVLDMCDSKLTREDEMRL 669
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + E+e+ grei nvvaceg+er+er et+++W++rl +aGF+++pl+++ +++ k  + + +++ + v+++s++l++gWk+r +++ S W
  Csa17g010900.1 670 MFEKEFYGREIINVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKIKIDNGYDKNFDVDQNSNWLLQGWKGRIVYASSIW 759
                     **************************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.235363740IPR005202Transcription factor GRAS
PfamPF035143.8E-112389759IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MGSYPDGFPG SMDQFDFTSE FDLPASSNNT TLGLAATNGF YLDEPFLDFA SMDPPLPQSY  60
PHNNNNKAAV AEGDLLSSPS DDADFSDSVL KYISQVLMEE DMEEKPCMFH DALALQAAEK  120
SLYEALGEKY PSSSSSASID HHEKLTHDSP DGSCSGGAFS DYASTTTTTS SDSHWSVDGF  180
ENRSSWLQSP MPSNFVFQST SRSNSVTVGG AGGNRSGFGD DLVSNMFKDS ELAMQFKRGV  240
EEASKFLPKS SQLFIDVDSY IPSNSGSKEN GSEVFVKAEK KDETEHHRLT GKKSHWRDDD  300
EDSVEERSNK QSAVYVEESE LSEMFDKILV CGPGKPVCIL DQKFPAEPAN VETTQQIAVQ  360
SNGAKIRGKK STATTSLSND SGKKETADLR TLLVLCAQAV SVDDRRTANE MLRQIREHSS  420
PLGNGSERLA HYFANSLEAR LAGTGTQIYT ALSSKKTSAA DMLKAYQTYM SVCPFKKAAI  480
IFANHSLMRF TANANTIHII DFGISYGFQW PALIHRLSLR PGGSPKLRIT GIELPQRGFR  540
PAEGVQETGN RLARYCQRHN VPFEYNAIAQ KWETIKVEDL KLRQGEFVAV NSLFRFKNLL  600
DETVLVNSPR DAVLKLIRKV NPNVFIPAIL SGNYNAPFFV TRFREALFHY SAVLDMCDSK  660
LTREDEMRLM FEKEFYGREI INVVACEGTE RVERPETYKQ WQARLIRAGF RQLPLEKELM  720
QNLKIKIDNG YDKNFDVDQN SNWLLQGWKG RIVYASSIWV PSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5039676326382Protein SCARECROW
5b3h_A8e-5039676325381Protein SCARECROW
5b3h_D8e-5039676325381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g010900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankAK3167930.0AK316793.1 Arabidopsis thaliana AT1G07530 mRNA, complete cds, clone: RAFL05-11-B19.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475513.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLR0IBA10.0R0IBA1_9BRAS; Uncharacterized protein
STRINGXP_010475513.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]