PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g009600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 27969.6 Da PI: 5.5354 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.5e-14 | 1 | 43 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +eEd+ll+++++++G ++W++ ++ g+ R++k+c++rw +yl Csa17g009600.1 1 AEEDQLLINYITLHGHPNWRSLPQSAGLLRCGKSCRLRWINYL 43 59*************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 7e-15 | 49 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Csa17g009600.1 49 RGNFTSLEEDTIINLHQILGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 94 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 1 | 50 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-7 | 1 | 43 | No hit | No description |
SMART | SM00717 | 3.8E-4 | 1 | 45 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.87E-24 | 1 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-11 | 1 | 43 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.461 | 1 | 43 | IPR017930 | Myb domain |
PROSITE profile | PS51294 | 22.008 | 44 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-13 | 49 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-25 | 51 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.44E-8 | 51 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
AEEDQLLINY ITLHGHPNWR SLPQSAGLLR CGKSCRLRWI NYLRPDIKRG NFTSLEEDTI 60 INLHQILGNR WSAIAAKLPG RTDNEIKNVW HTHLKKRLHQ NQDGDTKETV VTATSTTTTT 120 DAKRPTSPEQ QQQQSSSSGD VSAVTTSGNN NDHISNGNSK DSATSSKDVP PALIDESFWS 180 EVVSMDYNIS GDDHVKNEIK IENWEGSLDR NDNKGYNFSK LYNHDMEFWF DHLTTSPVVG 240 EISDISDF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-20 | 2 | 98 | 13 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g009600.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493437 | 1e-124 | AB493437.1 Arabidopsis thaliana At1g06180 mRNA for hypothetical protein, partial cds, clone: RAAt1g06180. | |||
GenBank | AY519550 | 1e-124 | AY519550.1 Arabidopsis thaliana MYB transcription factor (At1g06180) mRNA, complete cds. | |||
GenBank | BT025173 | 1e-124 | BT025173.1 Arabidopsis thaliana At1g06180 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475346.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
Swissprot | Q9LNC9 | 1e-114 | MYB13_ARATH; Transcription factor MYB13 | ||||
TrEMBL | V4L200 | 1e-117 | V4L200_EUTSA; Uncharacterized protein | ||||
STRING | XP_010475346.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 1e-108 | myb domain protein 13 |
Publications ? help Back to Top | |||
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