PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g009590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 463aa    MW: 51927.9 Da    PI: 6.0003
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g009590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.5e-10262303854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      Er RR + +++f  L++l+P++     +K + a+i+ +A++YIk+L
  Csa17g009590.1 262 TERERRVHFKDRFGDLKKLIPNP-----TKSDRASIVGEAIDYIKEL 303
                     7**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.91E-9252305No hitNo description
SuperFamilySSF474593.52E-12253318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.1254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-10254312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-7260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7261303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
TCFCNSLLRV SSDCFNRKNK NKGSSERYSS ANDDFETMEG GGGMYEEIGC FDPNAPAELT  60
AERSVSPAEP PPTITVVGSS NNNSNCSLED LSEFHLSPQD SSLAASASAQ LHINATPPNC  120
EHHQFQSSMH HQTVLQDPSS YPQQSNNWDN GYQEFVNLGP NHTTPDLLSL LQLPRSSLPP  180
FANPSLQDII MTSSSVSAYD PLFHLNFPLQ HPNNGTTFLG VDQDQAETNQ GVNLLYDEEN  240
NNLDVGLNRK GRGSRKRKIF PTERERRVHF KDRFGDLKKL IPNPTKSDRA SIVGEAIDYI  300
KELLRTIDEF KLLVEKKRIK QRNREGDDVV DENFKAQSEV VEQSSINKKN NALRCSWLKR  360
KSKFTEVDVR IIDDEVTIKI VQKKKINSLL FVSKVIDQLQ LDLHHVAGAQ IGEHHSFLFN  420
TKICEGSSVY ASAIADRVME VLEKQYMEAL SMNNGYHCYS SD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g009590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886190.0AF488619.1 Arabidopsis thaliana clone bHLH089 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0042620.0BT004262.1 Arabidopsis thaliana clone RAFL15-18-B21 (R20806) putative bHLH protein (At1g06170) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475345.10.0PREDICTED: transcription factor bHLH89-like
SwissprotQ9LND00.0BH089_ARATH; Transcription factor bHLH89
TrEMBLD7KFB60.0D7KFB6_ARALL; Basic helix-loop-helix family protein
STRINGXP_010475345.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.20.0bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]