PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g009580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 27055.8 Da PI: 4.666 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.3e-19 | 82 | 132 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + k r++lg+f+taeeAa a+++a+ +l+g Csa17g009580.1 82 SYRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 132 69*******.**********32..2.24***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.04E-31 | 81 | 142 | No hit | No description |
Pfam | PF00847 | 2.0E-13 | 82 | 132 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 82 | 142 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.077 | 82 | 140 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-38 | 82 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-30 | 82 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 83 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 106 | 122 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MQMESQASFL SGEFSPENSS SSSWSSQESF LWEESFLHQS FDQSFLLSST PTYYSDDFFT 60 FGSSIIKEEA TIAAEEEEEE KSYRGVRKRP WGKYAAEIRD STRKGIRVWL GTFDTAEEAA 120 LAYDQAAFAL KGSLAVLNFP VDVVKESLRK MENVNLNDGE SPVITLKRKH SMRNRPRGKK 180 KSSSSSLLTS SPSSSSSSSS SSLSSRSIKQ SVDDTTQQES NTTLVVLEDL GAEYLEELMR 240 SCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-28 | 79 | 140 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene. {ECO:0000269|PubMed:18467450}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g009580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT011001 | 0.0 | BT011001.1 Arabidopsis thaliana At1g06160 gene, complete cds. | |||
GenBank | BT014958 | 0.0 | BT014958.1 Arabidopsis thaliana At1g06160 gene, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F9P14 | 0.0 | AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475344.1 | 1e-175 | PREDICTED: ethylene-responsive transcription factor ERF094-like | ||||
Swissprot | Q9LND1 | 1e-100 | ERF94_ARATH; Ethylene-responsive transcription factor ERF094 | ||||
TrEMBL | A0A1J3I794 | 1e-112 | A0A1J3I794_NOCCA; Uncharacterized protein | ||||
STRING | XP_010475344.1 | 1e-175 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3990 | 18 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06160.1 | 1e-76 | octadecanoid-responsive Arabidopsis AP2/ERF 59 |