PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g007520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 134aa MW: 14695 Da PI: 7.7552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.4e-20 | 19 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrd ++ g r++lg+f+tae+Aa+a+++a+ +++g Csa17g007520.1 19 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 69 79*******.**********65443..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.3E-35 | 19 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.32E-17 | 19 | 78 | No hit | No description |
Pfam | PF00847 | 3.3E-14 | 19 | 69 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 19 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-23 | 19 | 79 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-32 | 19 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MDQGGRTGGG GGGGAEQGKF RGVRRRPWGK YAAEIRDSRK HGERVWLGTF DTAEDAARAY 60 DRAAYSMRGQ AAILNFPHEY NMGTGSSSTA ANSSSSSRQV FEFEYLDDSV LDELLEYGEN 120 YNKTHNVNMG KRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-54 | 1 | 110 | 1 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 11 | GGRTGGGGG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g007520.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT026421 | 1e-156 | BT026421.1 Arabidopsis thaliana At1g04370 mRNA, complete cds. | |||
GenBank | CP002684 | 1e-156 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F19P19 | 1e-156 | AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010475087.1 | 2e-94 | PREDICTED: ethylene-responsive transcription factor 14 | ||||
Refseq | XP_010475088.1 | 2e-94 | PREDICTED: ethylene-responsive transcription factor 14 | ||||
Swissprot | P93822 | 8e-65 | ERF97_ARATH; Ethylene-responsive transcription factor 14 | ||||
TrEMBL | R0GSM3 | 3e-64 | R0GSM3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010475087.1 | 8e-94 | (Camelina sativa) | ||||
STRING | XP_010475088.1 | 8e-94 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 7e-62 | Ethylene-responsive element binding factor 14 |