PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g006860.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 196aa    MW: 21063.5 Da    PI: 4.464
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g006860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.7e-171968255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIr p     +  r +lg+f tae+Aa+a++ a+++++g
  Csa17g006860.1 19 RYRGVRKRP-WGKYAAEIRNPI----SkNRKWLGTFKTAEDAARAYDSAAREFRG 68
                    69*******.**********72....359***********************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.5251976IPR001471AP2/ERF domain
PfamPF008472.7E-101968IPR001471AP2/ERF domain
CDDcd000182.26E-291976No hitNo description
Gene3DG3DSA:3.30.730.101.4E-301976IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-211977IPR016177DNA-binding domain
SMARTSM003803.4E-341982IPR001471AP2/ERF domain
PRINTSPR003673.4E-102031IPR001471AP2/ERF domain
PRINTSPR003673.4E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MTPQDQKSVT NAAASGEVRY RGVRKRPWGK YAAEIRNPIS KNRKWLGTFK TAEDAARAYD  60
SAAREFRGSK AITNFPLPGY GRGALVTPVR TIPPGARDME INFSLTEPAG AQDVLSPAVA  120
EAVAGFFIDQ PEAIELREEL DRVYPLGFEP DDMGLSVGLE TPLEVEPESS SAVEVEPETN  180
SAVDGNVNLN LNLGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-212077361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-202077664ATERF1
3gcc_A1e-202077664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g006860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475009.11e-139PREDICTED: ethylene-responsive transcription factor 10-like
SwissprotQ9ZWA24e-57ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLR0I9861e-55R0I986_9BRAS; Uncharacterized protein
STRINGXP_010475009.11e-139(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.14e-46ERF domain protein 10
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]