PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g002190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 360aa    MW: 41236.6 Da    PI: 5.923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g002190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.47.8e-062042371755
                     HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     N++f+ L++++P+ +       ++Ka++L  +++Y+ +L+
  Csa17g002190.1 204 NEKFSVLKSMVPTvN------EVNKASVLNYTIKYLLQLE 237
                     99***********55......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-2213135IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.988187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.13E-4201241No hitNo description
Gene3DG3DSA:4.10.280.102.2E-8204254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-8204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MADGEEAVRN IRLRKQLAVA VKSLQWNYAI FWSSSQTQYG VLEWGEGYYN GDIRKRKNKS  60
YEADSTYGLQ RSKQLRNLYL SMLEGDTKVT TTGHGHGRDT DDKTSSNVML SPDDLSDEEW  120
YYLVCMSYVF APAQCFLRWK SQSVTSNPNY HQKQSNVLWK ILHDVPLMHS ADEKKMFQAE  180
KTGLNQRVSM ECDDDDPSDK SEENEKFSVL KSMVPTVNEV NKASVLNYTI KYLLQLEARV  240
KELESRIGQR KPTMKENMLS ELIEETSETE QGMVRDETTH VRVKLKESEV FIEVRCLYRD  300
CIVADIMEAV SNLNMDAFSI ESHSHDGVLV LNLKAKFRGD AVTSVGMIKR ELKRIACES*
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g002190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474787.11e-159PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F11e-74BH012_ARATH; Transcription factor MYC1
TrEMBLA0A087HKB22e-86A0A087HKB2_ARAAL; Uncharacterized protein
STRINGXP_010474787.11e-158(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.12e-71bHLH family protein