PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g002000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27242.7 Da    PI: 9.3537
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g002000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.83.4e-241762449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +n  n qvtfskRr g++KKA+EL++LCda+va+i+fs++gk++ +
  Csa17g002000.1 17 KNAANLQVTFSKRRSGLFKKASELCTLCDAQVAIIVFSPSGKVFSF 62
                    7999***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.904666IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-34665IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-25773IPR002100Transcription factor, MADS-box
CDDcd002659.19E-34772No hitNo description
PRINTSPR004044.5E-21828IPR002100Transcription factor, MADS-box
PfamPF003196.4E-251662IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-212843IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-214364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRKNLGRRK VEMVKMKNAA NLQVTFSKRR SGLFKKASEL CTLCDAQVAI IVFSPSGKVF  60
SFGHPDVNLL VDYSSGRVSN TNLDDPNRKL YIQNLNDRLT EARDGKENEQ RKRAMLLENE  120
RESSNNPDNW WRNSPAELNL SQLAHMKDAL EGLIKEVGET AAPPLFHQTT PTFYVETSIN  180
AAPATVNGGN VFTNQGLFDH PILAFPFGFD VMNRIPAGYN HSQIQNQEFK QAHPHHGPRY  240
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-16684183MEF2 CHIMERA
6byy_B8e-16684183MEF2 CHIMERA
6byy_C8e-16684183MEF2 CHIMERA
6byy_D8e-16684183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g002000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474754.10.0PREDICTED: agamous-like MADS-box protein AGL28
SwissprotQ9LMM86e-96AGL28_ARATH; Agamous-like MADS-box protein AGL28
TrEMBLR0I4791e-104R0I479_9BRAS; Uncharacterized protein
STRINGXP_010474754.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17507710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.13e-98AGAMOUS-like 28
Publications ? help Back to Top
  1. Cheng JZ,Zhou YP,Lv TX,Xie CP,Tian CE
    Research progress on the autonomous flowering time pathway in Arabidopsis.
    Physiol Mol Biol Plants, 2017. 23(3): p. 477-485
    [PMID:28878488]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]