PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g001510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 356aa    MW: 39900.1 Da    PI: 6.1768
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g001510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3985.8e-3153155196
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  Csa17g001510.1  53 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDesE 147
                     89***************************966677889*************************************************54344235 PP

                     EE..EEEE CS
              B3  89 efelvvkv 96 
                     + +l++ +
  Csa17g001510.1 148 RSKLYIDW 155
                     55555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-4246160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.19E-3049141IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-2751147No hitNo description
PfamPF023622.8E-2853156IPR003340B3 DNA binding domain
SMARTSM010196.3E-2253159IPR003340B3 DNA binding domain
PROSITE profilePS5086314.74853159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MDLSLAPTAT TSSDQEQDRE QELTSNIGAS SSSGTGNNLP MMMLPPPEKE HMFDKVVTPS  60
DVGKLNRLVI PKQHAERYFP LDSSNNQNGT LLNFQDRNGK MWRFRYSYWN SSQSYVMTKG  120
WSRFVKEKKL DAGDIVSFQR GIGDESERSK LYIDWRHRPD MSLVQAHQFG NFGFNFNFPT  180
TSQYSNRFLP LPEYNAVPIH RSLNIGNHQR SYYNNNNQRQ EFVGYGTYGN LAGRCYYTGS  240
PLDQRNIVGS EPLVIESVPV VPGRLTPVML PPPPSTAGKR LRLFGVNMEC GNDYSQQEES  300
WVMPRGEIGA SSSSSSALRL NLSTDHDDDG DDGDGGDDDQ FAKKGKSSFS LNFNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-63471612116B3 domain-containing transcription factor NGA1
5os9_B5e-63471612116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g001510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073230.0AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965660.0AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankFJ8737330.0FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474686.10.0PREDICTED: B3 domain-containing transcription factor NGA3
SwissprotQ9MAN10.0NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLR0GQN10.0R0GQN1_9BRAS; Uncharacterized protein
STRINGXP_010474686.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.10.0B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]