PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g001480.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 344aa MW: 39252.8 Da PI: 5.7764

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g001480.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	47	8.3e-15	2	87	58	127
NAM 58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..................kgelvglkktLvfykgrapkgektdWvmheyr 127 +yfFs+r++kya+g+r+nr+t sg+Wk tg++++v+++ +++++g k++ f r++ + tdWv+hey Csa17g001480.2 2 CYFFSRRENKYARGNRQNRKTPSGRWKLTGEHTDVKDQfkswplsatghdnkigtgDDNKIGHKRVVQFR--RDNGIVDTDWVIHEYY 87 6**********************************99888888887766666665566*****8..777778*******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	21.217	1	108	IPR003441	NAC domain
SuperFamily	SSF101941	1.26E-15	2	108	IPR003441	NAC domain
Pfam	PF02365	2.4E-7	3	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MCYFFSRREN KYARGNRQNR KTPSGRWKLT GEHTDVKDQF KSWPLSATGH DNKIGTGDDN 60 KIGHKRVVQF RRDNGIVDTD WVIHEYYHDT ILPEHLRTTY VICRLEYKGN DKSILSAKAK 120 PTDPYPSFVP AIMTNSAGSV VNQSGYYNTY SEYDSTNHHG QQFNEYLNML DQFPQLVSYD 180 GGQQMVLDDE VYPPYNGLLL NENCNVCIPK KPVTGFFTDD SCGSDTDSMI GSDNSSVTEP 240 DHTPIDDKLS LNTTKPLHNS EAQEQLELHL QGQEKVISRQ ESNPELEMAE DSTIKNTPST 300 KTVKQEWVVF EDISRRKSQW IYLKNMIIGF LLFISIIGWI IGV*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MCYFFSRREN KYARGNRQNR KTPSGRWKLT GEHTDVKDQF KSWPLSATGH DNKIGTGDDN  60
KIGHKRVVQF RRDNGIVDTD WVIHEYYHDT ILPEHLRTTY VICRLEYKGN DKSILSAKAK  120
PTDPYPSFVP AIMTNSAGSV VNQSGYYNTY SEYDSTNHHG QQFNEYLNML DQFPQLVSYD  180
GGQQMVLDDE VYPPYNGLLL NENCNVCIPK KPVTGFFTDD SCGSDTDSMI GSDNSSVTEP  240
DHTPIDDKLS LNTTKPLHNS EAQEQLELHL QGQEKVISRQ ESNPELEMAE DSTIKNTPST  300
KTVKQEWVVF EDISRRKSQW IYLKNMIIGF LLFISIIGWI IGV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g001480.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010474684.1	0.0	PREDICTED: NAC domain-containing protein 1-like
Swissprot	Q0WV96	4e-90	NAC1_ARATH; NAC domain-containing protein 1
TrEMBL	D7KQC4	4e-89	D7KQC4_ARALL; ANAC001
STRING	XP_010474684.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01010.1	9e-78	NAC domain containing protein 1

Publications ? help Back to Top
Davuluri RV, et al. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics, 2003. 4: p. 25 [PMID:12820902] Palaniswamy SK, et al. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol., 2006. 140(3): p. 818-29 [PMID:16524982] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836]