PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g001480.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 1046aa MW: 120722 Da PI: 5.0303

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g001480.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.8	1.5e-38	5	138	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +Gf F+P+deelv +yL++k+eg++ ++e +i+ev+i++++PwdL+ + k+k+++ wyfFs+r +ky +g+r++r+t sg Wk tg++ ev+++ Csa17g001480.1 5 VGFGFRPNDEELVGHYLRNKIEGNSSHVEVAISEVNICSYDPWDLRfQsKYKSRDAMWYFFSCRVNKYGNGNRQSRTTVSGKWKLTGESVEVKDQ 99 6**********************999777**********85247888889**********************************9 PP NAM 96 ......kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++g k++Lvf ++r p+ +k+dWv+he++ Csa17g001480.1 100 wgiasgVRGKIGHKRVLVFLDARFPDKTKSDWVIHEFHY 138 8887765556*************************96 PP
2	NAM	103.1	3.7e-32	424	567	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +Gf F+P+d+elv +yL +k+ g++ +e +i+ev+i++++Pw+L+ +k++++++ +yfFs+r++kya+g+r+nr+t sg+Wk tg++++v++ Csa17g001480.1 424 FVGFGFRPRDDELVGYYLYHKIMGNTRLVEWAINEVNICDFDPWTLRlqSKIESTDRMCYFFSRRENKYARGNRQNRKTPSGRWKLTGEHTDVKD 518 58**********************888778**********8534888888999******************************** PP NAM 95 k..................kgelvglkktLvfykgrapkgektdWvmheyr 127 + +++++g k++ f r++ + tdWv+hey Csa17g001480.1 519 QfkswplsatghdnkigtgDDNKIGHKRVVQFR--RDNGIVDTDWVIHEYY 567 99888888887766666665566*****8..777778*******6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.382	3	156	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-39	5	156	IPR003441	NAC domain
Pfam	PF02365	2.5E-18	5	137	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-32	417	588	IPR003441	NAC domain
PROSITE profile	PS51005	33.82	423	588	IPR003441	NAC domain
Pfam	PF02365	3.4E-17	425	566	IPR003441	NAC domain
Pfam	PF11443	3.9E-20	922	1011	IPR024553	Domain of unknown function DUF2828

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence Send to blast
MEDRVGFGFR PNDEELVGHY LRNKIEGNSS HVEVAISEVN ICSYDPWDLR FQSKYKSRDA 60 MWYFFSCRVN KYGNGNRQSR TTVSGKWKLT GESVEVKDQW GIASGVRGKI GHKRVLVFLD 120 ARFPDKTKSD WVIHEFHYDL LPEQKRTYVI CRLEYKGDDP DVLSAYAIDP TPAFAPNMAN 180 SEGSVVNQSR QGNSESYNTY SEYDSANHGQ QFNMQQSVQG NSGYYNPFPE YDLANNGQWL 240 SDYFYPQQQV PYSAAPYDEN SELIRNFVIE ETRERTSMQE HYSDHQPKKP VTGVLGDDSS 300 DNDSMTFGDT SSSTDSGCSS NESYYTPIDD DVPSLNTVVE PLHNYEAQPC QSKEKVINTQ 360 KSECEWKMAE DSIKKPPSTK TVKQSWIVLE KRSERNAQWN YLINMIVGVL LFISIIGREM 420 DDVFVGFGFR PRDDELVGYY LYHKIMGNTR LVEWAINEVN ICDFDPWTLR LQSKIESTDR 480 MCYFFSRREN KYARGNRQNR KTPSGRWKLT GEHTDVKDQF KSWPLSATGH DNKIGTGDDN 540 KIGHKRVVQF RRDNGIVDTD WVIHEYYHDT ILPEHLRTTY VICRLEYKGN DKSILSAKAK 600 PTDPYPSFVP AIMTNSAGSV VNQSGYYNTY SEYDSTNHHG QQFNEYLNML DQFPQLVSYD 660 GGQQMVLDDE VYPPYNGLLL NENCNVCIPK KPVTGFFTDD SCGSDTDSMI GSDNSSVTEP 720 DHTPIDDKLS LNTTKPLHNS EAQEQLELHL QGQEKVISRQ ESNPELEMAE DSTIKNTPST 780 KTVKQEWVVF EDISRRKSQW IYLKNMIIGF LLFISIIGWI IGSLNFAGDE FELRQMMQAA 840 ANLSVIWNLS LRGSSSKVHI LSPKYQKSHA LHCLRSEGHE EFENSPQVLF CDIMFLNKQR 900 LAAVEELKKL KKEKDELLER INQLEEESQI VIKKAACKPN MDWGGNTDLQ KVFDCILDVA 960 VENNLTDDEM IKRIYVFSDM EFDNATGNYH WEWEVSDSES DPRSDYQTAY ESDYETRYEE 1020 RLKKSKERSK KKWETDYHHR FITFL*

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence Send to blast

MEDRVGFGFR PNDEELVGHY LRNKIEGNSS HVEVAISEVN ICSYDPWDLR FQSKYKSRDA  60
MWYFFSCRVN KYGNGNRQSR TTVSGKWKLT GESVEVKDQW GIASGVRGKI GHKRVLVFLD  120
ARFPDKTKSD WVIHEFHYDL LPEQKRTYVI CRLEYKGDDP DVLSAYAIDP TPAFAPNMAN  180
SEGSVVNQSR QGNSESYNTY SEYDSANHGQ QFNMQQSVQG NSGYYNPFPE YDLANNGQWL  240
SDYFYPQQQV PYSAAPYDEN SELIRNFVIE ETRERTSMQE HYSDHQPKKP VTGVLGDDSS  300
DNDSMTFGDT SSSTDSGCSS NESYYTPIDD DVPSLNTVVE PLHNYEAQPC QSKEKVINTQ  360
KSECEWKMAE DSIKKPPSTK TVKQSWIVLE KRSERNAQWN YLINMIVGVL LFISIIGREM  420
DDVFVGFGFR PRDDELVGYY LYHKIMGNTR LVEWAINEVN ICDFDPWTLR LQSKIESTDR  480
MCYFFSRREN KYARGNRQNR KTPSGRWKLT GEHTDVKDQF KSWPLSATGH DNKIGTGDDN  540
KIGHKRVVQF RRDNGIVDTD WVIHEYYHDT ILPEHLRTTY VICRLEYKGN DKSILSAKAK  600
PTDPYPSFVP AIMTNSAGSV VNQSGYYNTY SEYDSTNHHG QQFNEYLNML DQFPQLVSYD  660
GGQQMVLDDE VYPPYNGLLL NENCNVCIPK KPVTGFFTDD SCGSDTDSMI GSDNSSVTEP  720
DHTPIDDKLS LNTTKPLHNS EAQEQLELHL QGQEKVISRQ ESNPELEMAE DSTIKNTPST  780
KTVKQEWVVF EDISRRKSQW IYLKNMIIGF LLFISIIGWI IGSLNFAGDE FELRQMMQAA  840
ANLSVIWNLS LRGSSSKVHI LSPKYQKSHA LHCLRSEGHE EFENSPQVLF CDIMFLNKQR  900
LAAVEELKKL KKEKDELLER INQLEEESQI VIKKAACKPN MDWGGNTDLQ KVFDCILDVA  960
VENNLTDDEM IKRIYVFSDM EFDNATGNYH WEWEVSDSES DPRSDYQTAY ESDYETRYEE  1020
RLKKSKERSK KKWETDYHHR FITFL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-21	6	566	18	138	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250\|UniProtKB:Q949N0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g001480.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269\|PubMed:17158162}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF439834	0.0	AF439834.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds.
GenBank	BT001115	0.0	BT001115.1 Arabidopsis thaliana At1g01010/T25K16_1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010474682.1	0.0	PREDICTED: NAC domain-containing protein 1-like
Swissprot	Q0WV96	0.0	NAC1_ARATH; NAC domain-containing protein 1
TrEMBL	A0A178WAE4	0.0	A0A178WAE4_ARATH; NAC001
STRING	XP_010474682.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7658	16	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01010.1	0.0	NAC domain containing protein 1

Publications ? help Back to Top
Davuluri RV, et al. AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinformatics, 2003. 4: p. 25 [PMID:12820902] Palaniswamy SK, et al. AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks. Plant Physiol., 2006. 140(3): p. 818-29 [PMID:16524982] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836]