PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g001470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 358aa    MW: 41013.3 Da    PI: 5.3649
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g001470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.51e-39101352128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     p+G+rF Ptdee+v++yL++k  +++  ++++vi++v i++++Pw+Lp + ++k ++k+w fFs++ +ky +g+++ r+tksg+Wk tg+ k+++
  Csa17g001470.1  10 PVGLRFCPTDEEIVDDYLRPKNLETDtSRVDQVISTVTICSFDPWELPcQsRIKLKDKSWCFFSRKVNKYDRGEQQIRKTKSGFWKITGNPKAIM 104
                     89******************9776663777788**************9634888899************************************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++ ++g kk+L+fy    +k +k+dWvmhey+l
  Csa17g001470.1 105 R-NRVKIGAKKVLMFYF---SKDSKSDWVMHEYHL 135
                     *.999***********4...44458********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-453153IPR003441NAC domain
PROSITE profilePS5100541.7969153IPR003441NAC domain
PfamPF023651.4E-2110135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MIAAREMETP VGLRFCPTDE EIVDDYLRPK NLETDTSRVD QVISTVTICS FDPWELPCQS  60
RIKLKDKSWC FFSRKVNKYD RGEQQIRKTK SGFWKITGNP KAIMRNRVKI GAKKVLMFYF  120
SKDSKSDWVM HEYHLLSPVQ KMMTYTICKV MFKGEENEVS SPPLHLVNNS GGSEEEAHQL  180
DDAATIATKE EEWKTWLNDN DDEETNIMFL QDNRNDYRPP KSLTGVFTDD IDSSDDNDSD  240
FLSPATNSIG TSCTCDDSFG SSNHRIDQIK DLPEPPNSTV ELVSPLTQEV SQALRTNVDT  300
TEIKKMNPCD DARGTEIEDH KLGQEMIKKN KRAGNFFLRM VQKFVKKIRL CYPISRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-25615014162NO APICAL MERISTEM PROTEIN
1ut4_B3e-25615014162NO APICAL MERISTEM PROTEIN
1ut7_A3e-25615014162NO APICAL MERISTEM PROTEIN
1ut7_B3e-25615014162NO APICAL MERISTEM PROTEIN
4dul_A3e-25615014162NAC domain-containing protein 19
4dul_B3e-25615014162NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g001470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010474681.10.0PREDICTED: NAC domain-containing protein 3 isoform X2
SwissprotQ5PP281e-146NAC3_ARATH; NAC domain-containing protein 3
TrEMBLR0ILL21e-162R0ILL2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010474680.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02220.11e-148NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chou ML, et al.
    The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.
    Int J Mol Sci, 2018.
    [PMID:29937503]