PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g057260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 855aa    MW: 95000.4 Da    PI: 6.0184
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g057260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.27.8e-29567617252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ek+is+e+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++
  Csa16g057260.1 567 EKTISIEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 617
                     799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.416551637IPR003035RWP-RK domain
PfamPF020428.1E-26569617IPR003035RWP-RK domain
SuperFamilySSF542778.5E-21746836No hitNo description
PROSITE profilePS5174519.007754836IPR000270PB1 domain
SMARTSM006666.6E-22754836IPR000270PB1 domain
CDDcd064072.61E-33755835No hitNo description
Gene3DG3DSA:3.10.20.2409.7E-26755836No hitNo description
PfamPF005642.6E-17755835IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MELDDLDLSG SWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSESAGDVG AGDLYVAPSS  60
RFTDYSLLLA PPPPSSQSDD TTTTKEVIID DNHAPSPYSG LMPSSENQDN PDSYCAIKAK  120
MTQALRFFKE STGQQHLLAQ VWAPVKNRGR YVLTTSGQPF VLAPNSNGLH QYRMVSLTYM  180
FSLDGERDGD LGLPGRVFRK KLPEWTPNVQ YYSSKEFSRL GHALHYNVQG TLALPVFEPS  240
RQLCVGVVEL IMTSPKINYA PEVEKVCKAL EAVNLKTSEI LNHETTQICN EGRQNALAEI  300
LEILTVVCET YKLPLAQTWV PCRHRSVLAF GGGFKKSCSS FDGSCMGKVC MSTSDLAVYV  360
VDAHVWGFRD ACAEHHLQKG QGVAGRAFLS GNLCFSRDVT RFCKTDYPLV HYARMFKLTS  420
CFAVCLKSTF TGDDEYVLEF FLPPAITDES EQDFLLGSLF QTMKQHYSSL KVVSETELCE  480
NEISLEVVEA SEDGMVYSKL EPIRIHRPAP ISKDYLELNA PEQKLSLNSD LMENNEVADG  540
FERFQTLEPL SEAKTVKKSE RKRGKTEKTI SIEVLQQYFA GSLKDAAKSL GVCPTTMKRI  600
CRQHGISRWP SRKINKVNRS LTRLKHVIDS VQGADGSLNL TSLSPRPWSH QISPTENQSP  660
KNFPPASTSP PSYLQDVKIE NRDAEDSAGS STSRASCKVG VICETRFRLP THNQETVRQT  720
ALDDSDSSSK NIANFWAHLS CQDTASPTTL HNKLVSIKAT YREDIIRFKI SPESVSIMGL  780
KQQVAKRLKL EMAAFELKYL DDDSEWVSVS CDADLSECLD TSAAKANTLR LSVHDVTLNF  840
GSSCESSEEN MMCL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g057260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0009330.0BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473720.10.0PREDICTED: protein NLP6 isoform X1
SwissprotQ8RWY40.0NLP6_ARATH; Protein NLP6
TrEMBLR0GCV50.0R0GCV5_9BRAS; Uncharacterized protein
STRINGXP_010473720.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25072666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.10.0Nin-like family protein
Publications ? help Back to Top
  1. Liseron-Monfils C, et al.
    Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs.
    Plant Signal Behav, 2014.
    [PMID:24270626]
  2. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  3. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]