PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g057260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 855aa MW: 95000.4 Da PI: 6.0184 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.2 | 7.8e-29 | 567 | 617 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+is+e+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Csa16g057260.1 567 EKTISIEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 617 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.416 | 551 | 637 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.1E-26 | 569 | 617 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 8.5E-21 | 746 | 836 | No hit | No description |
PROSITE profile | PS51745 | 19.007 | 754 | 836 | IPR000270 | PB1 domain |
SMART | SM00666 | 6.6E-22 | 754 | 836 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.61E-33 | 755 | 835 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 9.7E-26 | 755 | 836 | No hit | No description |
Pfam | PF00564 | 2.6E-17 | 755 | 835 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 855 aa Download sequence Send to blast |
MELDDLDLSG SWPLDQITFS SNFKSPVIFS SSEQPFSPLW SFSESAGDVG AGDLYVAPSS 60 RFTDYSLLLA PPPPSSQSDD TTTTKEVIID DNHAPSPYSG LMPSSENQDN PDSYCAIKAK 120 MTQALRFFKE STGQQHLLAQ VWAPVKNRGR YVLTTSGQPF VLAPNSNGLH QYRMVSLTYM 180 FSLDGERDGD LGLPGRVFRK KLPEWTPNVQ YYSSKEFSRL GHALHYNVQG TLALPVFEPS 240 RQLCVGVVEL IMTSPKINYA PEVEKVCKAL EAVNLKTSEI LNHETTQICN EGRQNALAEI 300 LEILTVVCET YKLPLAQTWV PCRHRSVLAF GGGFKKSCSS FDGSCMGKVC MSTSDLAVYV 360 VDAHVWGFRD ACAEHHLQKG QGVAGRAFLS GNLCFSRDVT RFCKTDYPLV HYARMFKLTS 420 CFAVCLKSTF TGDDEYVLEF FLPPAITDES EQDFLLGSLF QTMKQHYSSL KVVSETELCE 480 NEISLEVVEA SEDGMVYSKL EPIRIHRPAP ISKDYLELNA PEQKLSLNSD LMENNEVADG 540 FERFQTLEPL SEAKTVKKSE RKRGKTEKTI SIEVLQQYFA GSLKDAAKSL GVCPTTMKRI 600 CRQHGISRWP SRKINKVNRS LTRLKHVIDS VQGADGSLNL TSLSPRPWSH QISPTENQSP 660 KNFPPASTSP PSYLQDVKIE NRDAEDSAGS STSRASCKVG VICETRFRLP THNQETVRQT 720 ALDDSDSSSK NIANFWAHLS CQDTASPTTL HNKLVSIKAT YREDIIRFKI SPESVSIMGL 780 KQQVAKRLKL EMAAFELKYL DDDSEWVSVS CDADLSECLD TSAAKANTLR LSVHDVTLNF 840 GSSCESSEEN MMCL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g057260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT000933 | 0.0 | BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473720.1 | 0.0 | PREDICTED: protein NLP6 isoform X1 | ||||
Swissprot | Q8RWY4 | 0.0 | NLP6_ARATH; Protein NLP6 | ||||
TrEMBL | R0GCV5 | 0.0 | R0GCV5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010473720.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2507 | 26 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
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