PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g057110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 598aa    MW: 65092.2 Da    PI: 9.5852
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g057110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18138188256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Csa16g057110.1 138 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 188
                     59******9.**********954...5**************************97 PP
2AP258.71.4e-18392442256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Csa16g057110.1 392 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 442
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.24E-16137197No hitNo description
PROSITE profilePS5103223.301138195IPR001471AP2/ERF domain
SMARTSM003801.1E-36138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-30138196IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22138195IPR016177DNA-binding domain
PfamPF008477.6E-13139188IPR001471AP2/ERF domain
PRINTSPR003671.2E-9139150IPR001471AP2/ERF domain
PRINTSPR003671.2E-9161177IPR001471AP2/ERF domain
CDDcd000183.24E-16391451No hitNo description
PROSITE profilePS5103223.301392449IPR001471AP2/ERF domain
SMARTSM003801.1E-36392455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-30392450IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22392449IPR016177DNA-binding domain
PfamPF008477.6E-13393442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MEESNDLYQT NFSPRISEIR ASLSQIILGG GPNTLDSIFS LLTPSSSVES ATTSSNTLNP  60
PPPPQLGSSV YLRQRDIIEK FHLQNRAISA PHHPPPLFSS SFDHHQTSEL MLQAAAGTPA  120
EAFAAALAAG RTTKKKKLYR GVRQRHWGKW VAEIRLPQNR MRVWLGTYDT AEAAAYAYDR  180
AAYKLRGEYA RLNFPNLKDP SELLGLGDSS KLIALKNAVD GKIQSICQRV RKERAKKSAK  240
VSKNSSATAD SSYSSSPEIV SSSPATMTTT AVNSEDSYWI ILGGGPNTLD SIFSLLTPSS  300
SVESATTSSN TLNPPPPPQL GSSVYLRQRD IIEKFHLQNR AISAPHHPPP LFSSSFDHHQ  360
TSELMLQAAA GTPAEAFAAA LAAGRTTKKK KLYRGVRQRH WGKWVAEIRL PQNRMRVWLG  420
TYDTAEAAAY AYDRAAYKLR GEYARLNFPN LKDPSELLGL GDSSKLIALK NAVDGKIQSI  480
CQRVRKERAK KSAKVSKNSS ATADSSYSSS PEIISSSPAT MTTTAVNSED SYWVSQMRLC  540
NSENSSPASV SVSDEIPATT ATAAEDEDAM MGVDTDGFLL ARMPSFDPEL IWEVLAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18135449263ATERF1
3gcc_A1e-18135449263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g057110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0666890.0AC066689.5 Arabidopsis thaliana chromosome 1 BAC F15H21 genomic sequence, complete sequence.
GenBankAK2287630.0AK228763.1 Arabidopsis thaliana mRNA for AP2-containing DNA-binding protein, complete cds, clone: RAFL16-09-E15.
GenBankAY5608760.0AY560876.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g64380) mRNA, complete cds.
GenBankBT0330820.0BT033082.1 Arabidopsis thaliana unknown protein (At1g64380) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473699.10.0PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-155ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLD7KSA81e-170D7KSA8_ARALL; Uncharacterized protein
STRINGXP_010418502.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-99ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]