PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g056360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 597aa MW: 66657.1 Da PI: 4.8402 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2e-14 | 405 | 451 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h E++RR+++N++f +Lr+++P+ + K +K++iL ++eY+++Lq Csa16g056360.1 405 NHALCEKKRREKLNERFMTLRSIIPSiS------KIDKVSILDDTIEYLQELQ 451 79999*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.2E-54 | 13 | 202 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.418 | 401 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.58E-18 | 405 | 469 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-12 | 405 | 451 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-17 | 405 | 467 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.74E-15 | 405 | 455 | No hit | No description |
SMART | SM00353 | 1.3E-16 | 407 | 456 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 597 aa Download sequence Send to blast |
MTTVENRTVP GNLKKQLAVS VRNIQWSYGI FWSVSASQPG VLEWGDGYYN GDIKTRKTIQ 60 AAEVKVDQLG LERSEQLREL YESLSLAESS ASGGSQVTRR ASAAALSPED LTDTEWYYLV 120 CMSFVFNIGE GIPGGALSNG EPIWLCNAQT ADSKVFTRSL LAKSASLQTV VCFPFLGGVL 180 EIGTTEHITE DLNVIQCVKT MFLEAPPYAT ISTRSDYQEV FDPLSDDKYI PVFATEAFPT 240 PSTSEFEQEP EDHDSFINDG GASQVQSWQF VGEELSNCVH QSLNSSDCVS QTFVGTTGRV 300 ACDPRRSRVQ RLGQIQEQSN HVNMDDDVHY QGVISTIFKT THQLILGPQF QNFDKRSSFT 360 RWKRSSSVKT LGEKSQKMIK KILFEVPLMN KKEGLLPDTP EETGNHALCE KKRREKLNER 420 FMTLRSIIPS ISKIDKVSIL DDTIEYLQEL QKRVQELESC REYADTETRM TMMKRKKPED 480 EDERASANCM NSKRKGSDVN VGEDEPVDTG YAGLTDNLRI SSLGNEVVIE LRCAWREGIL 540 LEIMDVISDL NLDSHSVQSS TGDGLLCLNV NCKHKGTKMA TTGMIQEALQ RVAWIC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 6e-16 | 26 | 202 | 24 | 192 | Transcription factor MYC3 |
4rqw_B | 6e-16 | 26 | 202 | 24 | 192 | Transcription factor MYC3 |
4rs9_A | 6e-16 | 26 | 202 | 24 | 192 | Transcription factor MYC3 |
4yz6_A | 6e-16 | 26 | 202 | 24 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 410 | 415 | KKRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation but promotes trichome formation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Involved in seed mucilage production. Activates the transcription of GL2. {ECO:0000269|PubMed:12917293, ECO:0000269|PubMed:12956536, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15590742}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g056360.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By UV treatment. Negatively regulated by MYB66/WER, GL3 and BHLH2 in the developing non-hair cells, and positively regulated by CPC and TRY in the developing hair cells. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:15590742}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF251687 | 0.0 | AF251687.1 Arabidopsis thaliana putative transcription factor BHLH2 (BHLH2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473611.1 | 0.0 | PREDICTED: transcription factor EGL1 | ||||
Swissprot | Q9CAD0 | 0.0 | EGL1_ARATH; Transcription factor EGL1 | ||||
TrEMBL | D7KTF4 | 0.0 | D7KTF4_ARALL; Uncharacterized protein | ||||
STRING | XP_010473611.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2592 | 28 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63650.3 | 0.0 | bHLH family protein |