PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g055810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 648aa    MW: 72186.6 Da    PI: 6.8575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g055810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.31.2e-1302636441374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv+lL+   ea++s++ +++++++ar s+lasp+g +pm+Rl+ay+ eALa r+ar++++++++ pp+e +++ ++e+ +al+++++v+Pi+kf 
  Csa16g055810.1 263 LVNLLTGSIEAIRSRNIAAINHFIARTSDLASPRGrTPMTRLIAYYIEALALRVARMWPHIFHIAPPREFDRTVEDESGNALRFLNQVTPIPKFI 357
                     6789999****************************99***********************************99********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taN+++l+a+eg+ervHiiDfdi+qGlQWp+++q+LasR+++p+++RiTg+g+    sk el+etg+rL+ fAe+++++fef++ v++rled+
  Csa16g055810.1 358 HFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRTNPPHHVRITGIGE----SKLELNETGDRLHGFAEAMNLQFEFHP-VVDRLEDV 447
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk+gE++aVn+v+q+h++l + +  +   +++L l++s++P  +v++eqea+hnse++ +r++++l+yysa+fd+++++l+++s  r+k
  Csa16g055810.1 448 RLWMLHVKEGESVAVNCVMQMHKTLYDGTGGAI--RDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLIRVK 540
                     *************************77666655..89********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdg.yrveee...........sgslvlgWkdr 365
                     +E++l+grei+n+vaceg++r+erh  +++Wr++le+ GF+++ +se+++ q k+llr+++  ++g ++v+ +           sg ++l W+++
  Csa16g055810.1 541 IEEMLFGREIRNIVACEGSHRQERHVGFRHWRRMLEQLGFRSLGVSEREVLQSKMLLRMYGpgNEGfFNVDRSdedgdggeggsSGGVTLRWSEQ 635
                     ************************************************************99667788999555678889889899999****** PP

            GRAS 366 pLvsvSaWr 374
                     pL+++SaW+
  Csa16g055810.1 636 PLYTISAWT 644
                     ********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.937237610IPR005202Transcription factor GRAS
PfamPF035144.3E-128263644IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MLAGCSSSSL LSPTRRLRSE AVAATSATVS AHFPMNTQRL DLPCSSSFTR KETPSTRPLG  60
RSISLDNSNN NNNNNSTKPI ERKTSGCSLK QNIKLPPLAT TRGNGEGFSW NNDNNNNNNN  120
NNRGKKSLKR LAEEEDESCL SRAKRTKCEN EGDGDDEGKV CFVPSEVISQ PLPSNPNWVD  180
SVITELAGIG DKDVESSRPA AVKEASGSST SASSESQSLS HRGVPEPTNG SRNPYTHSTE  240
ERTSGNINNN NNHRNDLQRD FELVNLLTGS IEAIRSRNIA AINHFIARTS DLASPRGRTP  300
MTRLIAYYIE ALALRVARMW PHIFHIAPPR EFDRTVEDES GNALRFLNQV TPIPKFIHFT  360
ANEMLLRAFE GKERVHIIDF DIKQGLQWPS FFQSLASRTN PPHHVRITGI GESKLELNET  420
GDRLHGFAEA MNLQFEFHPV VDRLEDVRLW MLHVKEGESV AVNCVMQMHK TLYDGTGGAI  480
RDFLGLIRST NPIALVLAEQ EAEHNSEQLE TRVCNSLKYY SAMFDAIHTN LATDSLIRVK  540
IEEMLFGREI RNIVACEGSH RQERHVGFRH WRRMLEQLGF RSLGVSEREV LQSKMLLRMY  600
GPGNEGFFNV DRSDEDGDGG EGGSSGGVTL RWSEQPLYTI SAWTIGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6227264428379Protein SCARECROW
5b3h_A3e-6227264427378Protein SCARECROW
5b3h_D3e-6227264427378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g055810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0107950.0AC010795.5 Arabidopsis thaliana chromosome 1 BAC F16M19 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473538.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2H1ZEE00.0A0A2H1ZEE0_ARATH; GRAS family transcription factor
STRINGXP_010473537.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72962743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein