PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g055030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 571aa MW: 62357.8 Da PI: 6.0091 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.6e-31 | 327 | 385 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Csa16g055030.1 327 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGNHNHP 385 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.3E-34 | 311 | 387 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-28 | 319 | 387 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 321 | 387 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-37 | 326 | 386 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-27 | 328 | 385 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 571 aa Download sequence Send to blast |
MDRGWSGLTL DSSSLDLLNP NRIITHNNNH RRFSNPLTTM PRIGDDDGDN DQKTRVSTNG 60 SEFRFPVSLS GIRDREDDDF SSGAAGDNDR EVPGEVDFFS DKKSRVCRED DAGFRVKKEE 120 QDDRTDVNTG LNLRTTGNTK SDESMIDDGE SSEMEDKRVK NELVKLQDEL KRMTMDNQKL 180 RELLAQVSNS YTSLQMHLVS LMQQQQQQQQ QNNNKVIEAA EKPEETIVPR QFIDLGPTRA 240 VGEGEEASNS SSEEKTRSGG SSPAERRSNE VRDRKRLGRE ESPETESNKI QKVNSTNPAT 300 FDQSAAEATM RKARVSVRAR SEAPMISDGC QWRKYGQKMA KGNPCPRAYY RCTMATGCPV 360 RKQVQRCAED RSILITTYEG NHNHPLPPAA VAMASTTTAA ANMLLSGSMS SHDGMMNPTN 420 LLARAVLPCS TSMATISASA PFPTVTLDLT HSPPPANGSN PSSSAAATTN NDHNLLMQRP 480 QQQQQQMANL PPGMLPHVIG QALYNQSKFS GLQFSNGSPS AAAYSQSHAV ADTITALTAD 540 PNFTAALAAV ISSMINGSNQ HDGEGNNKNQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 313 | 389 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g055030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF331712 | 0.0 | AF331712.1 Arabidopsis thaliana transcription factor WRKY6 (WRKY6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010473445.1 | 0.0 | PREDICTED: WRKY transcription factor 6 | ||||
Swissprot | Q9C519 | 0.0 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | R0IA37 | 0.0 | R0IA37_9BRAS; Uncharacterized protein | ||||
STRING | XP_010473445.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 0.0 | WRKY family protein |