PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g050670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 1128aa MW: 126357 Da PI: 6.2805

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g050670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.6e-21	98	153	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Csa16g050670.1 98 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 153 7999************************************************9877 PP
2	Homeobox	65.3	8.6e-21	481	536	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k Csa16g050670.1 481 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 536 7999************************************************9877 PP
3	START	110.4	2.9e-35	256	398	1	122
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 e+a++a+ el+k+a+++ep+W +s+ e++n+de+l++f+++++ +++ea+r++g+v+m++++l ++++d++ qW+e++a ka+t Csa16g050670.1 256 EIANRATLELQKMATSGEPLWLRSVetgrEILNYDEYLKEFPQAQAsslpgrKTIEASRDVGIVFMDAHKLAQSFMDVG-QWKEMFAclvsKAAT 349 578999************************************99*****************************.*********** PP EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS- CS START 82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagd 122 ++vi++g ga+qlm+ e+q+l+p+vp R+++fvR++rql +d Csa16g050670.1 350 VDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLXTKD 398 ******************************************77665 PP
4	START	232.8	9.5e-73	639	866	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 e+a++a+ el+k+a+++ep+W +s+ e++n+de+l++f+++++ +++ea+r++g+v+m++++l ++++d++ qW+e++a ka+t Csa16g050670.1 639 EIANRATLELQKMATSGEPLWLRSVetgrEILNYDEYLKEFPQAQAsslpgrKTIEASRDVGIVFMDAHKLAQSFMDVG-QWKEMFAclvsKAAT 732 578999************************************99*****************************.*********** PP EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwv 167 ++vi++g ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvSv++e++++e ++s+ ++++lpSg++ie++snghskvtwv Csa16g050670.1 733 VDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLTPEKWAIVDVSVSVEDSNTEkEASLLKCRKLPSGCIIEDTSNGHSKVTWV 827 ******************************************************************************************* PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh d+++++++ l+rslv++gla+ga++wvatlq +ce+ Csa16g050670.1 828 EHLDVSASTVQPLFRSLVNTGLAFGARHWVATLQLHCER 866 ***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-23	84	149	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.85E-20	87	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.815	95	155	IPR001356	Homeobox domain
SMART	SM00389	9.6E-18	97	159	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-18	98	153	IPR001356	Homeobox domain
CDD	cd00086	8.70E-16	102	153	No hit	No description
PROSITE pattern	PS00027	0	130	153	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	19.85	247	400	IPR002913	START domain
SuperFamily	SSF55961	1.92E-11	250	395	No hit	No description
Pfam	PF01852	1.1E-29	256	398	IPR002913	START domain
SMART	SM00234	5.8E-28	256	483	IPR002913	START domain
Gene3D	G3DSA:1.10.10.60	7.2E-23	467	532	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.85E-20	470	539	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.815	478	538	IPR001356	Homeobox domain
SMART	SM00389	9.6E-18	480	542	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-18	481	536	IPR001356	Homeobox domain
CDD	cd00086	8.70E-16	485	536	No hit	No description
PROSITE pattern	PS00027	0	513	536	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	43.716	630	869	IPR002913	START domain
SuperFamily	SSF55961	4.63E-31	633	866	No hit	No description
CDD	cd08875	1.52E-107	634	865	No hit	No description
Pfam	PF01852	2.2E-66	639	866	IPR002913	START domain
SMART	SM00234	1.5E-84	639	866	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.1E-7	680	865	IPR023393	START-like domain
SuperFamily	SSF55961	2.35E-15	895	1113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1128 aa Download sequence Send to blast
MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGNTDP ADEDFLSRRV VDDEDRTVEM 60 SSENSGPTRS RSEEDLEGED HDEDLEDDDG NKGNKRKRKK YHRHTTDQIR HMEALFKETP 120 HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKAELEK LREENKAMRE 180 SFSKAANSSC PNCGGGPDDL HLENSKLKAE LDKLRAALGR TPYPLQASCS EDQEQRLGSL 240 DFYTGVFALE KSRIAEIANR ATLELQKMAT SGEPLWLRSV ETGREILNYD EYLKEFPQAQ 300 ASSLPGRKTI EASRDVGIVF MDAHKLAQSF MDVGQWKEMF ACLVSKAATV DVIRQGEGPS 360 RIDGAIQLMF GEMQLLTPVV PTREVYFVRS CRQLXTKDFF SSPALSLSLA GIFRNASSGN 420 TDPADEDFLS RRVVDDEDRT VEMSSENSGP TRSRSEEDLE GEDHDEDLED DDGNKGNKRK 480 RKKYHRHTTD QIRHMEALFK ETPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKAIQE 540 RHENSLLKAE LEKLREENKA MRESFSKAAN SSCPNCGGGP DDLHLENSKL KAELDKLRAA 600 LGRTPYPLQA SCSEDQEQRL GSLDFYTGVF ALEKSRIAEI ANRATLELQK MATSGEPLWL 660 RSVETGREIL NYDEYLKEFP QAQASSLPGR KTIEASRDVG IVFMDAHKLA QSFMDVGQWK 720 EMFACLVSKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLTPE 780 KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL 840 FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS LGVTTLAGRK SVLKMAQRMT 900 QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPTLL 960 FDFFRDEARR HEWDALSNGA HVQSIASLSK GQDRGNSVAI QTVKTREKSI WVLQDSCTNS 1020 YESVVVYAPV DINTTQLVLA GHDSSSIQIL PCGFSIIPDG VESRPLVITT TQDDRNSQGG 1080 SLLTLALQTL INPSPAAKLN MESVDSVTNL VSVTLHNIKR SLQIEDC*

Sequence ? help Back to Top

Protein Sequence Length: 1128 aa Download sequence Send to blast

MSMAVEMSSK QPTKDFFSSP ALSLSLAGIF RNASSGNTDP ADEDFLSRRV VDDEDRTVEM  60
SSENSGPTRS RSEEDLEGED HDEDLEDDDG NKGNKRKRKK YHRHTTDQIR HMEALFKETP  120
HPDEKQRQQL SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKAELEK LREENKAMRE  180
SFSKAANSSC PNCGGGPDDL HLENSKLKAE LDKLRAALGR TPYPLQASCS EDQEQRLGSL  240
DFYTGVFALE KSRIAEIANR ATLELQKMAT SGEPLWLRSV ETGREILNYD EYLKEFPQAQ  300
ASSLPGRKTI EASRDVGIVF MDAHKLAQSF MDVGQWKEMF ACLVSKAATV DVIRQGEGPS  360
RIDGAIQLMF GEMQLLTPVV PTREVYFVRS CRQLXTKDFF SSPALSLSLA GIFRNASSGN  420
TDPADEDFLS RRVVDDEDRT VEMSSENSGP TRSRSEEDLE GEDHDEDLED DDGNKGNKRK  480
RKKYHRHTTD QIRHMEALFK ETPHPDEKQR QQLSKQLGLA PRQVKFWFQN RRTQIKAIQE  540
RHENSLLKAE LEKLREENKA MRESFSKAAN SSCPNCGGGP DDLHLENSKL KAELDKLRAA  600
LGRTPYPLQA SCSEDQEQRL GSLDFYTGVF ALEKSRIAEI ANRATLELQK MATSGEPLWL  660
RSVETGREIL NYDEYLKEFP QAQASSLPGR KTIEASRDVG IVFMDAHKLA QSFMDVGQWK  720
EMFACLVSKA ATVDVIRQGE GPSRIDGAIQ LMFGEMQLLT PVVPTREVYF VRSCRQLTPE  780
KWAIVDVSVS VEDSNTEKEA SLLKCRKLPS GCIIEDTSNG HSKVTWVEHL DVSASTVQPL  840
FRSLVNTGLA FGARHWVATL QLHCERLVFF MATNVPTKDS LGVTTLAGRK SVLKMAQRMT  900
QSFYRAIAAS SYHQWTKITT KTGQDMRVSS RKNLHDPGEP TGVIVCASSS LWLPVSPTLL  960
FDFFRDEARR HEWDALSNGA HVQSIASLSK GQDRGNSVAI QTVKTREKSI WVLQDSCTNS  1020
YESVVVYAPV DINTTQLVLA GHDSSSIQIL PCGFSIIPDG VESRPLVITT TQDDRNSQGG  1080
SLLTLALQTL INPSPAAKLN MESVDSVTNL VSVTLHNIKR SLQIEDC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	478	482	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g050670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF360294	0.0	AF360294.1 Arabidopsis thaliana putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
GenBank	BT001956	0.0	BT001956.1 Arabidopsis thaliana clone U09291 putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010430051.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A178WBY6	0.0	A0A178WBY6_ARATH; GL2
STRING	XP_010473020.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12370	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]