PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g049830.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 154aa    MW: 16991.8 Da    PI: 4.855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g049830.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-16104145247
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47 
                     g+ GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a +
  Csa16g049830.1 104 GFMGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARASD 145
                     789******.**********32....25*****************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-14104146IPR016177DNA-binding domain
SMARTSM003805.7E-10104153IPR001471AP2/ERF domain
PROSITE profilePS5103216.199104153IPR001471AP2/ERF domain
PfamPF008476.1E-11104145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-19105146IPR001471AP2/ERF domain
PRINTSPR003671.5E-9105116IPR001471AP2/ERF domain
CDDcd000183.60E-19105145No hitNo description
PRINTSPR003671.5E-9127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MENTDDLRSI LETRQSFFET ETLFSDVMMA AKEPSNGATS FDISSLFSPN PNQELDNSRR  60
VMDDSIAAVV GENVLFGDNN KVPASEVQGG GVKPWRKVPQ KNGGFMGVRK RPWGRWSAEI  120
RDRIGRCRHW LGTFDTAEEA ARASDSVLHD GGE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g049830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0188482e-89AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence.
GenBankAC0188492e-89AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence.
GenBankAY5608442e-89AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds.
GenBankBT0260382e-89BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds.
GenBankCP0026842e-89CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464462e-89DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019093394.11e-103PREDICTED: ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M51e-50ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLR0I8Z98e-59R0I8Z9_9BRAS; Uncharacterized protein
STRINGXP_010474513.11e-103(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.15e-53ERF family protein