PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g048110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family STAT
Protein Properties Length: 660aa    MW: 74774.7 Da    PI: 5.9603
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g048110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT172.85.9e-542173321117
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 
                     ld+vl+na+gqpv+kdvevvasLlyad+  + +k++daeapLLi+ +Gvefss  rp+kll Gr+sfklkisqLss  +nrLf+ikf i++ k+y
  Csa16g048110.1 217 LDIVLSNAIGQPVHKDVEVVASLLYADT-RLEAKMSDAEAPLLIRDEGVEFSSDGRPIKLLDGRSSFKLKISQLSSTNENRLFWIKFGIRNAKDY 310
                     89*************************9.7899************************************************************** PP

            STAT  96 pfleavskpirCisrsrntrss 117
                     pfl+avs+pirCis s ++r++
  Csa16g048110.1 311 PFLQAVSNPIRCISISPDVRPL 332
                     ******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2002.7E-524165IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498996.2E-729161IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103382.90E-59557659No hitNo description
Gene3DG3DSA:3.30.505.106.1E-9564622IPR000980SH2 domain
SuperFamilySSF555503.23E-11565651IPR000980SH2 domain
PROSITE profilePS5000110.434568659IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MAGVSAIETE KYSLLEDFKV DVEVDDEEYK SFSLCFWVYL VNSTTFPSTI IRQVHSDIIV  60
SAPFLVLDEN KKMILLPLTL LHKEAPDPVD TCSWKQVPSV STKSEFPLDK WVHVGCEVSR  120
NYMRLVIDGK IEGEHFLTSL LTKNSNRKIS LFGVGGDGYS VQGFIKCAQV LPACDHVDHH  180
YMKDPPLLLS VNKSSSPGIK LDDDGVWKAS CGEVFSLDIV LSNAIGQPVH KDVEVVASLL  240
YADTRLEAKM SDAEAPLLIR DEGVEFSSDG RPIKLLDGRS SFKLKISQLS STNENRLFWI  300
KFGIRNAKDY PFLQAVSNPI RCISISPDVR PLPKRLANID HPSSTESPDL LQNNTYSFKR  360
IRLGKESDSG REESFSYQHC NSYPQTSRQF EDGNGHEEYN SPTDSENVEM RLTISDSTIF  420
RYCLGNLKDK ALLLKEITNN SSDEEVLKFA NQVSLYSGCS HHSYQINMAR ELIAQGTSAW  480
ISMSRNNQHV HWDNVVYEIE EHFMRISKCS SRSLTNKDVE LLRRISGCYY EYMTQENFEN  540
IWCWLFPVAY TISRGLISEM WCSSSPKWVQ GFITKEEAEH SLQGQEPGTF ILRFPVSRSW  600
PHPDAGSLVV TYVGHDFALH HKQLNICQSS GRYMDAKLLQ DMLLAEPELS QLGRIIRSH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g048110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215320.0AK221532.1 Arabidopsis thaliana mRNA for Hypothetical protein, complete cds, clone: RAFL07-69-D06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472686.10.0PREDICTED: uncharacterized protein LOC104752284 isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLD7KVC10.0D7KVC1_ARALL; Uncharacterized protein
STRINGXP_010472686.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]