PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g046620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 270aa    MW: 30289.3 Da    PI: 8.8847
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g046620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29143202159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK  ++++ pr+Y+rC+++ +C vkkkv+rsaedp++v+ tYeg+Hnh+
  Csa16g046620.1 143 VKDGYQWRKYGQKITRDKPSPRAYFRCSFSpSCLVKKKVQRSAEDPSFVVATYEGTHNHP 202
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-27134202IPR003657WRKY domain
SuperFamilySSF1182901.31E-24140202IPR003657WRKY domain
SMARTSM007742.1E-31143203IPR003657WRKY domain
PfamPF031061.4E-23144202IPR003657WRKY domain
PROSITE profilePS5081125.27145204IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDYDPNTNPF DLHFSGKLPK QEVSDSGSAD VKPKWLVKDD ETCMLQEELN RVNSENKKLT  60
ETLARVCEKY YALQNLLKEL QSPETVKFQK EKLTKKRKQD LDDFVSSPVG LSCGPTIEKI  120
TSDKATVSTA YFHTEKSDTS LTVKDGYQWR KYGQKITRDK PSPRAYFRCS FSPSCLVKKK  180
VQRSAEDPSF VVATYEGTHN HPGQHASGSR TVKLDLVQGV LEPVEEKKER GTIQDVLVQQ  240
MASSLTKDPK FTAALAAAIS GRFIEQSRT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-191452011974Probable WRKY transcription factor 4
2lex_A4e-191452011974Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18897QKEKLTKKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g046620.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472507.10.0PREDICTED: probable WRKY transcription factor 60
SwissprotQ9SK331e-166WRK60_ARATH; Probable WRKY transcription factor 60
TrEMBLQ0WSE51e-163Q0WSE5_ARATH; Putative WRKY-type DNA binding protein
STRINGXP_010472507.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65841945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.11e-168WRKY DNA-binding protein 60
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang Y, et al.
    Regulation of oncogene expression in T-DNA-transformed host plant cells.
    PLoS Pathog., 2015. 11(1): p. e1004620
    [PMID:25615824]
  4. Geilen K,Böhmer M
    Dynamic subnuclear relocalisation of WRKY40 in response to Abscisic acid in Arabidopsis thaliana.
    Sci Rep, 2015. 5: p. 13369
    [PMID:26293691]
  5. Geilen K,Böhmer M
    Dynamic subnuclear relocalization of WRKY40, a potential new mechanism of ABA-dependent transcription factor regulation.
    Plant Signal Behav, 2015. 10(11): p. e1106659
    [PMID:26479147]
  6. Lu K, et al.
    Overexpression of an Arabidopsis cysteine-rich receptor-like protein kinase, CRK5, enhances abscisic acid sensitivity and confers drought tolerance.
    J. Exp. Bot., 2016. 67(17): p. 5009-27
    [PMID:27406784]