PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g046540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22099.5 Da PI: 8.9284 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.6 | 5e-21 | 4 | 43 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+ +s rqvtfskRr+g++KKA+EL++LC+ae+ +i+fs Csa16g046540.1 4 IKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSL 43 8999**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-21 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.381 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-24 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-24 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-9 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-9 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MVKIKKESHR QVTFSKRRAG LFKKASELCT LCGAEIGIIV FSLAKKPFSF GHPSVESVLD 60 RYLSRNNISL AQTQQPQGNP AAGCELNIQL TQILSEVEDE KKKGQAMEEI RKASVRRSVI 120 NWWEKPVEEM NMFQLQEMKH ALEELRKTVV TNMASFSEVK EDVFGFLDNK VTAPPYMNMS 180 AGLSSIYNFA NGNGCF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g046540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006585 | 0.0 | AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | DQ056542 | 0.0 | DQ056542.1 Arabidopsis thaliana MADS-box family protein (At2g24840) mRNA, complete cds. | |||
GenBank | EU836691 | 0.0 | EU836691.1 Arabidopsis thaliana MADS box protein AGL61 (AGL61) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019093742.1 | 1e-145 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
Swissprot | Q4PSU4 | 1e-128 | AGL61_ARATH; Agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7LJG1 | 1e-128 | D7LJG1_ARALL; Predicted protein | ||||
STRING | XP_010429480.1 | 1e-143 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 1e-130 | AGAMOUS-like 61 |
Publications ? help Back to Top | |||
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