PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g046500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 302aa    MW: 32700.7 Da    PI: 7.3155
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g046500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.53.2e-09546439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r C+ +++  ++lfC+ +  +lC +C  ++H        H++
  Csa16g046500.1  5 RLCDSCKSTAATLFCRADAAFLCGQCDGKIHTAnklasrHER 46
                    78******99*********************55666767765 PP
2zf-B_box25.82.2e-084792342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ +e+ +++  C+ +   lC  C   +H+       H++vp+
  Csa16g046500.1 47 VWLCEVCEQAPAHVTCKADAAALCIACDRDIHSAnplsrrHDRVPI 92
                    689*****************************66899999*99997 PP
3CCT69.68e-24235278144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Csa16g046500.1 235 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 278
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665249IPR000315B-box-type zinc finger
SMARTSM003365.5E-15249IPR000315B-box-type zinc finger
PfamPF006434.2E-7546IPR000315B-box-type zinc finger
CDDcd000211.46E-8549No hitNo description
PROSITE profilePS5011910.7934592IPR000315B-box-type zinc finger
PfamPF006431.1E-64792IPR000315B-box-type zinc finger
CDDcd000211.83E-94892No hitNo description
SMARTSM003361.3E-85092IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658235277IPR010402CCT domain
PfamPF062031.2E-17235277IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASSRLCDSC KSTAATLFCR ADAAFLCGQC DGKIHTANKL ASRHERVWLC EVCEQAPAHV  60
TCKADAAALC IACDRDIHSA NPLSRRHDRV PIVPFYDAVS GSAKSASSSI NFVDDDGGYA  120
DVSVEAASWL LPKEGGVEIS NLFSDLEYPK MEVTSENSSG NDGVVPVQNK TMFLGEDYFN  180
FDLAPSKTSQ QGFNFINQTD SSRSLDVALV PENGGVTAAI ATVTTPVVQL SPAEREARVL  240
RYREKRKNRK FEKTIRYASR KAYAEMRPRI KGRFAKRTDS RGEDGGGDVG VYGGFGVVPS  300
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g046500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472497.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK531e-172COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A178VTY81e-169A0A178VTY8_ARATH; COL3
STRINGXP_010472497.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27602765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-160CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]