PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa16g046230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 330aa MW: 35921.9 Da PI: 10.2834

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa16g046230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	250	307	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +d +++++tYegeH+h+ Csa16g046230.1 250 DEYSWRKYGQKPIKGSPHPRGYYKCSTFrGCPARKHVERALDDSTMLIVTYEGEHRHN 307 9**********************8766**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	7.9E-18	197	246	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.5E-32	236	308	IPR003657	WRKY domain
PROSITE profile	PS50811	29.976	243	309	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-26	246	308	IPR003657	WRKY domain
SMART	SM00774	2.0E-36	248	308	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	250	306	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MTVDIMRIPK MEDQTAIQEA ASQGLQSMEH LIRVLSNRPE ERNVDCSEIT DFTVSKFKKV 60 ISLLNRTGHA RFRRGPVQSP HPPPSSSSAP LPPPPAKITP LAPAPIQISA PVSFVQSNQQ 120 SVTLDFTRPS VFGAKTKSSE VVEFAKESFS VSSNNSSFMS SAITGDGSVS KGSSIFLAPA 180 APLPSSAKPP LAGLPYRKRC FEHDHSEDFS GKISGSGNGK CHCKKSRKNR MKRTVRVPAI 240 SAKIADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSTFRGC PARKHVERAL DDSTMLIVTY 300 EGEHRHNQSA MHENMMTSPS VSGLVFGSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-21	236	307	2	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa16g046230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF425836	0.0	AF425836.1 Arabidopsis thaliana WRKY transcription factor 17 (WRKY17) mRNA, complete cds.
GenBank	AK227604	0.0	AK227604.1 Arabidopsis thaliana mRNA for WRKY transcription factor 17, complete cds, clone: RAFL14-20-C13.
GenBank	BT006424	0.0	BT006424.1 Arabidopsis thaliana At2g24570 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010472466.1	0.0	PREDICTED: probable WRKY transcription factor 17
Swissprot	Q9SJA8	0.0	WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBL	R0HAG8	0.0	R0HAG8_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010472466.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2508	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24570.1	1e-171	WRKY DNA-binding protein 17

Publications ? help Back to Top
Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]