PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g045430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TALE | ||||||||
Protein Properties | Length: 643aa MW: 70917.8 Da PI: 6.8696 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 460 | 497 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + Csa16g045430.1 460 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 497 665569******************************88 PP | |||||||
2 | BELL | 123.7 | 7.6e-40 | 318 | 389 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Csa16g045430.1 318 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 389 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.9E-85 | 245 | 387 | IPR006563 | POX domain |
Pfam | PF07526 | 5.7E-52 | 251 | 386 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.86 | 438 | 501 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-9 | 441 | 505 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.80E-13 | 441 | 502 | No hit | No description |
SuperFamily | SSF46689 | 1.28E-17 | 442 | 508 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 444 | 507 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 458 | 497 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MALATTTFHH QSSDSSMSQD YNHHQGIFSF SNGFHRSSST THHEEEVDES AVSGAQIPVY 60 ETAGMLSEMF AFPGGGGGGG GSGGEILDQS STKQLLEQQN RHNNNSTLHM LLPNHHQGFA 120 FTDKNTMHQQ QQQQQQHFTW PSSSDHHQNR DMIGTVHVEG GKGLSLSLSS SLAAAKAEEY 180 RSIYCAAVDG TSSSTNASAH HHQFNQFKNL LLDNSSSSSY HHHQHQVVGH FGSSSSSPMA 240 ASSSIGGIYT LRNSKYTKPA QELLEEFCSV GRGHFKKNKL SRNNSNPNTT GGGGGGGGGG 300 SSSSAGTAND NPPLSPADRI EHQRRKVKLL SMLEEVDRRY NHYCEQMQMV VNSFDQVMGY 360 GAAVPYTTLA QKAMSRHFRC LKDAVAVQLK RSCELLGDKE AAGAASSGLT KGETPRLRLL 420 EQSLRQQRAF HHMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLNPYPSD ADKHLLARQT 480 GLSRNQVSNW FINARVRLWK PMVEEMYQQE AKEREEEAEE NENQQQRRQQ QTNNNDTKPN 540 NNENNFTVIT AQTPTTMTST HHDSDSSFLL PSVAAASHGG SDAFTVTTCQ QDVSDFHVDD 600 GVNDIRFGTK QPGDVSLTLG LRHSGNIPDK NTPFSVRDFG DF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 1e-15 | 447 | 505 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-15 | 447 | 505 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 7e-16 | 447 | 504 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-16 | 447 | 504 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 289 | 300 | TGGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g045430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF353092 | 0.0 | AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds. | |||
GenBank | AY058179 | 0.0 | AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. | |||
GenBank | AY142019 | 0.0 | AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010472371.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 0.0 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | D7LG22 | 0.0 | D7LG22_ARALL; Uncharacterized protein | ||||
STRING | XP_010472371.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 0.0 | BEL1-like homeodomain 4 |
Publications ? help Back to Top | |||
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