PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g045030.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 310aa    MW: 32987.7 Da    PI: 6.2673
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g045030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.82.8e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll  +v+++G+++W++I++ ++ gR++k+c++rw + 
   Csa16g045030.1 13 KGPWSPEEDDLLQTLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding53.45.9e-1768109447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
   Csa16g045030.1  68 FTAEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                      8******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.489863IPR017930Myb domain
SuperFamilySSF466897.11E-329106IPR009057Homeodomain-like
SMARTSM007171.8E-171261IPR001005SANT/Myb domain
PfamPF002492.8E-191358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-261466IPR009057Homeodomain-like
CDDcd001672.04E-161557No hitNo description
SMARTSM007175.6E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129419.34265114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2267113IPR009057Homeodomain-like
CDDcd001672.03E-1168110No hitNo description
PfamPF002491.7E-1468109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSGSTRKEMN RIKGPWSPEE DDLLQTLVEK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS  60
PEVEHRGFTA EEDDTIIRAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGGGGG  120
EGGQSGGYDG SLTDEQPLKR TASGGGGVGV VLTALSPTGS DVSEQSSGSV LPSSHVFTPT  180
ARAGGVVIEP SPSEEEEKDP VTCLSLSLPW VKESTPVRRD TAELFPVKRE EEEEEKERVI  240
NGFGGDFMTV LQEMIKTEVR SYMTDLHLGN GGGTGGGGGG GGGASSCMVQ GSNGRNVGFR  300
EFIGIGKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-40121143105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-40121143105C-Myb DNA-Binding Domain
1msf_C6e-40121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g045030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023911e-130AC002391.3 Arabidopsis thaliana chromosome 2 clone T20D16 map CIC06C07, complete sequence.
GenBankAK1172631e-130AK117263.1 Arabidopsis thaliana At2g23290 mRNA for putative MYB family transcription factor, complete cds, clone: RAFL16-81-L23.
GenBankAY0880071e-130AY088007.1 Arabidopsis thaliana clone 40307 mRNA, complete sequence.
GenBankAY5195741e-130AY519574.1 Arabidopsis thaliana MYB transcription factor (At2g23290) mRNA, complete cds.
GenBankBT0083431e-130BT008343.1 Arabidopsis thaliana At2g23280 mRNA, complete cds.
GenBankCP0026851e-130CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472329.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-128MYB73_ARATH; Transcription factor MYB73
TrEMBLD7LF961e-156D7LF96_ARALL; Uncharacterized protein
TrEMBLV4LUU21e-156V4LUU2_EUTSA; Uncharacterized protein
STRINGXP_010472329.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-142myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]