PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g044590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 528aa    MW: 56376.2 Da    PI: 9.4305
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g044590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.37.6e-25198242145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Csa16g044590.1 198 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 242
                     79****************************************985 PP
2QLQ51.53.1e-18134170137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++F+ +Q+++L++Q+l+yKy+ an+PvP+ Ll+ ++k
  Csa16g044590.1 134 GPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKK 170
                     59******************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-10134170IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.723135170IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.2E-12135167IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954198242IPR014977WRC domain
PfamPF088793.4E-21199241IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MDLGVRVSSH ETGSSPGQTE LGSGFINNNK QERSGFDGED CWRSSKLSRT STDGFSSSTS  60
AAAKTLSFHQ GIPLLRSTTI DPRRGQEHML SFSSASDKPD VSPYLQYCRN SGYGLGGMMN  120
TSSMHGNLLT GVKGPFSLTQ WAELEQQALI YKYITANVPV PSSLLLSLKK SFFPYGSLPP  180
NSFGWGSFHL GFSGGNMDPE PGRCRRTDGK KWRCSRDAVP DQKYCERHIN RGRHRSRKPV  240
EGQNGHNTNA AAASAAASTA AGVSKAAGTS AVAMRGLDNN NNSLAAAVIT HHHANNNQST  300
DSLATRVQNS RAASVFPTAM NLQPKDPHPK QTNNNPFEFG LISSDSLLNP SHKQASYGNS  360
SKGFGSYLDF SNQAKHSGNH NNDDSWPEEL KSDWTQLSMS IPMAPSSPVQ DKLPLSPLRL  420
SREFDLGLGV NTEFLEPGKK ANNWIPISWG NNNSMGGPLG EVLNSTTNSP KFGSSPTGVL  480
QKSTFGSLSN SSSGSSTVIG DNNNKNGDGK DPLGPTTLMN TSATAPL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g044590.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935600.0AB493560.1 Arabidopsis thaliana At2g22840 mRNA for hypothetical protein, partial cds, clone: RAAt2g22840.
GenBankAY1026340.0AY102634.1 Arabidopsis thaliana transcription activator (GRF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472281.10.0PREDICTED: growth-regulating factor 1
SwissprotO810010.0GRF1_ARATH; Growth-regulating factor 1
TrEMBLA0A178VNQ30.0A0A178VNQ3_ARATH; GRF1
STRINGXP_010472281.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.10.0growth-regulating factor 1
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]