PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g044560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 268aa MW: 29727.6 Da PI: 8.2085 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 111 | 165 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F+ +++++ ++++ LA++l+L rqV vWFqNrRa+ k Csa16g044560.1 111 RKKLRLTKEQSDLLEESFKHHSTLNPKQKQVLARELNLRPRQVEVWFQNRRARTK 165 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.8 | 8.3e-40 | 111 | 200 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq+ lLEesF+++++L+p++K+ lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en rL+ke +eL+ +l Csa16g044560.1 111 RKKLRLTKEQSDLLEESFKHHSTLNPKQKQVLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEVLKKCCETLTDENMRLRKEIQELK-TL 200 69*************************************************************************************9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.151 | 107 | 167 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.9E-16 | 109 | 171 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.25E-18 | 109 | 175 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 111 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.6E-16 | 111 | 165 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.01E-17 | 111 | 168 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 142 | 165 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 8.5E-22 | 167 | 210 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.7E-10 | 167 | 200 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MSFDDSCNSG LVLGLGLSPT PNHYNNAIKR STGYKLEPSL TLSLSGDPLL TVVAGADQLC 60 RQTSSLSGVS SFSSGRVVKR ERYSGEESPE EEETTERVVS DYHEDEGVSA RKKLRLTKEQ 120 SDLLEESFKH HSTLNPKQKQ VLARELNLRP RQVEVWFQNR RARTKLKQTE VDCEVLKKCC 180 ETLTDENMRL RKEIQELKTL KLSNQPVYMH MPASTLTMCP SCERIGAGGG RSVATTVVVD 240 GDRAKGPFSI SSKPHFFNPY TNPSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 159 | 167 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g044560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229218 | 0.0 | AK229218.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-50-N10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010472279.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT9-like | ||||
Swissprot | P46603 | 1e-140 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
TrEMBL | A0A1J3IVG7 | 1e-155 | A0A1J3IVG7_NOCCA; Homeobox-leucine zipper protein HAT9 | ||||
STRING | XP_010472279.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 1e-136 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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