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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa16g043040.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 296aa MW: 33039.7 Da PI: 9.9135 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa16g043040.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 332.1 | 1.5e-101 | 1 | 295 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76
m++ g+++ r+k+ y + ++++l +++++ms++aerda+i+ern+a+s+kk+ava+rd+a++qrdkal+er+kal+e
Csa16g043040.1 1 MENGGQYDngRFKPdYLKgaqsmwnmmpqhqikeQHNALV--MNKKIMSILAERDAAIHERNQAVSAKKEAVAARDEALQQRDKALSERDKALIE 93
8889998888999967779999999998777754446666..99*************************************************** PP
GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
rdn+++al+++ensl++a lsg k d +d++v+ e +kl ++p+++ ++e++ ++k+ kr++++k + + k kk +
Csa16g043040.1 94 RDNAYAALQHHENSLNFA-------LSGGKRGD----------GDDCVG-VEPHKLAVFPLSTIPPEVTSTTKVAKRKKESK---QGQVKMKKVG 167
*************96655.......47888877..........688999.88999***********9999988884433333...3344667778 PP
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
e+ +++v++++ ++s+++++s+d++ln v++De+ +PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S yPLP+++++r++R++grKmS+++f+
Csa16g043040.1 168 EDLNRRVAAPG--KKSRKDWDSLDVGLNLVTFDETIMPVPMCTCTGSARQCYKWGNGGWQSSCCTTTLSLYPLPQMPNKRHSRMGGRKMSGNVFS 260
8999*******..56******************************************************************************** PP
GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+lL++LaaeGydls+pvDLkd+WA+HGtn+++ti+
Csa16g043040.1 261 RLLSRLAAEGYDLSCPVDLKDYWARHGTNRYITIK 295
**********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MENGGQYDNG RFKPDYLKGA QSMWNMMPQH QIKEQHNALV MNKKIMSILA ERDAAIHERN 60
QAVSAKKEAV AARDEALQQR DKALSERDKA LIERDNAYAA LQHHENSLNF ALSGGKRGDG 120
DDCVGVEPHK LAVFPLSTIP PEVTSTTKVA KRKKESKQGQ VKMKKVGEDL NRRVAAPGKK 180
SRKDWDSLDV GLNLVTFDET IMPVPMCTCT GSARQCYKWG NGGWQSSCCT TTLSLYPLPQ 240
MPNKRHSRMG GRKMSGNVFS RLLSRLAAEG YDLSCPVDLK DYWARHGTNR YITIK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229090 | 0.0 | AK229090.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-37-J01. |
| GenBank | AK317165 | 0.0 | AK317165.1 Arabidopsis thaliana AT2G21240 mRNA, complete cds, clone: RAFL21-54-A06. |
| GenBank | AY084554 | 0.0 | AY084554.1 Arabidopsis thaliana clone 111536 mRNA, complete sequence. |
| GenBank | BT026109 | 0.0 | BT026109.1 Arabidopsis thaliana At2g21240 mRNA, complete cds. |
