PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g042100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 580aa MW: 63193.6 Da PI: 5.6403 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.9 | 1.9e-23 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+ltpsd+++ g +++p+ +a++ ++ + +l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ ++s Csa16g042100.1 124 FAKILTPSDANNGGGFSVPRYCADSVfplldfaADPPVQ--KLFITDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNGKKLIAGDSVVFM--RKS 214 89*********************999*****97555555..7************************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 e++++v+r+ Csa16g042100.1 215 HDEMFIGVRRA 225 88889***997 PP | |||||||
2 | Auxin_resp | 86 | 7.6e-29 | 283 | 365 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+++a+++ +Fevv++P a +s+Fvv++e+ve+++++ +++G+R+kma+etedss++++ +G+v+++ + ++ W++S+W++L+ Csa16g042100.1 283 AMNRADKGLPFEVVFYPTAVWSDFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWfQGIVSSTYQ-ETGPWRGSPWKQLQ 365 678999*****************************************************9999999999.888*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-33 | 116 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.4E-28 | 116 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.0E-21 | 124 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.76 | 124 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-19 | 124 | 226 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.28E-19 | 124 | 220 | No hit | No description |
Pfam | PF06507 | 3.8E-23 | 283 | 365 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MSPPSDSAAG DILHRGVDPM IWRACAGASV QIPLLYSRVY YFPQGHVEHC CPSSPLVSTP 60 PPSTSPVPCL ISSIQLLADP ITDEVFAHLL LQPVSQDQFL PTNFSRFAGY EGDVVDNNNK 120 VTTFAKILTP SDANNGGGFS VPRYCADSVF PLLDFAADPP VQKLFITDIH GAVWDFRHIY 180 RGTPRRHLLT TGWSKFVNGK KLIAGDSVVF MRKSHDEMFI GVRRAPISSS GGGTSYYGGD 240 EYNGYYSQSN GFVPPPKEDD GCAKKTFRRS GLGKLTAEAV SEAMNRADKG LPFEVVFYPT 300 AVWSDFVVRA EDVESSMSMY WTPGTRVKMA METEDSSRIT WFQGIVSSTY QETGPWRGSP 360 WKQLQIIWDE PEILQNVKRV NPWQVEMVAN ATQLHASFPP AKRLKFPHTG GFLSGDDGEI 420 HYPPQRGLSS AAAPDSSPYM FPYTTFPAGM QGARQYEFGS YNPTGFIGEN PPQLSTNNFF 480 SPLPGLEKVS TEKNFGSQPS DNLSPNSNTT NQSSGNDLVG NRGPTAAKAN SIKLFGKTIT 540 VQEPSESGPA ESGLCEEDGS KESSDNTTQL SLTPGPKNP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-62 | 17 | 386 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g042100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471984.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Swissprot | Q84WU6 | 0.0 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | R0HYF1 | 0.0 | R0HYF1_9BRAS; Auxin response factor (Fragment) | ||||
STRING | XP_010471984.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 0.0 | auxin response factor 17 |