PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g040730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 1047aa    MW: 115646 Da    PI: 8.5062
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g040730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.6e-40140216278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Csa16g040730.1 140 CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 216
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-33132201IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.941137214IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-37138219IPR004333Transcription factor, SBP-box
PfamPF031101.2E-28140213IPR004333Transcription factor, SBP-box
SuperFamilySSF484039.67E-8846940IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.826847950IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.0E-6847939IPR020683Ankyrin repeat-containing domain
CDDcd002041.43E-6850943No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1047 aa     Download sequence    Send to blast
MDEVGPQVAA PISIHHPMGK KRDLYHHHQP HWLVPSQQPK NDWNPNMWEW NSQRFEAKQV  60
EEEAAESLRL GSSNNNNNNN NNGGLSYEGR GERGLDLNLA TGFNDLEDTP VAVTSPPNKK  120
VKSRSPGRGG GGGGGNYPKC QVDNCKEDLS IAKDYHRRHK VCEVHSKATK ALVGKQMQRF  180
CQQCSRFHLL SEFDEGKRSC RRRLAGHNRR RRKTQPEEIT SRVVAPGNRD NTSNNANMDV  240
LALLTALACA QGRNEAKPNG SPGVPQREQL VQILNKINAL PLPMDLVSKL NNIGILARKN  300
PDQPSAMNPQ NGMDGASSPS TMDLLAVLSS TLGSSAPEAI ALLSQGGFGN KESNEKTKLT  360
SSDHGATTQL EKRTLEFPSF GGGERTSSSN HSPSQDSDSR GQDTRSSLSL QLFTSSPEDE  420
SRPTVASSTK YYSSASSNPV DDRSPSSSPV MQELFPLQTS PESRRCNNYR NTSPSPKTSC  480
RPLELFGASI RGPAANPNFN VSRHQSGYAS SGSDYSPPSL NSDAQDRTGK IVFKLLGKDP  540
SQLPGTLRTE IYSWLSSIPS EMESYIRPGC VILSVYVAMS ASAWEQLEEN LLQRVSSLVQ  600
DSNFWSNTRF LINTGRQLAS YKHGRIRLSK SWRTLNSPEL ITVSPLAVVA GEETALTVRG  660
RNLTTEGMSF RCAHMGNYAS MEVTGTEHRR TKFDELNVGS FKVQSASPVS LGRCFIEVEN  720
GFRGDSFPLI IANARICKEL NRLEDEFHTK DVIEEQTHNL DRPRSREEVL CFLNELGWLF  780
QRKWTSNIHG ESDFSLPRFK FLLVCSVERD YCSLIRTLLD MMVERNLGED GLMNKESLDM  840
LAESQLLNRA VKRRNTKMAE TLIHYSVNPS TKNFIFLPNI AGPGGITPLH LAASTSGSDD  900
MIDVLTNDPQ EIGLSCWNTL VDATGQTPFS YASMRNNHSY NSLVARKLAD KRNGQISLNI  960
ENGIDQIGLS KRLSSELKRS CNTCASVALK YQKRVSGSHR LFPTPIIHSM LAVATVCVCV  1020
CVFMHAFPIV RQGSHFSWGG LDYGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-29130213184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1848853RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g040730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2429580.0AJ242958.1 Arabidopsis thaliana partial mRNA for SPL1-Related3 protein (SPL1R3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471812.10.0PREDICTED: squamosa promoter-binding-like protein 16 isoform X1
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLD7KTV10.0D7KTV1_ARALL; Uncharacterized protein
STRINGXP_010471812.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein