PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g040560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 494aa    MW: 55103.2 Da    PI: 5.667
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g040560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.5e-53221501129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+ k+ +  l+   +i+evd++++ePw+Lp+++k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdkev++ 
  Csa16g040560.1  22 LPPGFRFHPTDEELITFYLASKIFHGGLSG-IHISEVDLNRCEPWELPEMAKMGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVYTG 115
                     79*************************999.78***************988999****************************************8 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +g lvg+kktLvfykgrap+g kt+Wvmheyrle
  Csa16g040560.1 116 gGGPLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 150
                     66677****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6217171IPR003441NAC domain
PROSITE profilePS5100558.93722171IPR003441NAC domain
PfamPF023651.4E-2623149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MMLAVEDVLS ELAGEEKNER GLPPGFRFHP TDEELITFYL ASKIFHGGLS GIHISEVDLN  60
RCEPWELPEM AKMGEKEWYF YSLRDRKYPT GLRTNRATTA GYWKATGKDK EVYTGGGGPL  120
VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE TDLSHRHTCK EEWVICRVFN KSGDRKNVGI  180
HNQISYLHNH SLSTTHHHDA LPLLLEPSDK TLTNFSSLLY DDPHQNYNNN LIHGSSGHNL  240
DELKALINPV VSQLNGIIFS PGNNNNNNDE DDFGFNLGVK TEPSSNGAIN NNELDVRDYL  300
ENPLFQEASY GLLGLSSSPG PLHMLLDSPC PLALQVXHNQ ISYLHNHSLS TTHHHDALPL  360
LLEPSDKTLT NFSSLLYDDP HQNYNNNLIH GSSGHNLDEL KALINPVVSQ LNGIIFSPGN  420
NNNNNDEDDF GFNLGVKTEP SSNGAINNNE LDVRDYLENP LFQEASYGLL GLSSSPGPLH  480
MLLDSPCPLG FQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-482217217166NO APICAL MERISTEM PROTEIN
1ut4_B1e-482217217166NO APICAL MERISTEM PROTEIN
1ut7_A1e-482217217166NO APICAL MERISTEM PROTEIN
1ut7_B1e-482217217166NO APICAL MERISTEM PROTEIN
3swm_A1e-482217220169NAC domain-containing protein 19
3swm_B1e-482217220169NAC domain-containing protein 19
3swm_C1e-482217220169NAC domain-containing protein 19
3swm_D1e-482217220169NAC domain-containing protein 19
3swp_A1e-482217220169NAC domain-containing protein 19
3swp_B1e-482217220169NAC domain-containing protein 19
3swp_C1e-482217220169NAC domain-containing protein 19
3swp_D1e-482217220169NAC domain-containing protein 19
4dul_A1e-482217217166NAC domain-containing protein 19
4dul_B1e-482217217166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g040560.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416562.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8510.0NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLR0ID000.0R0ID00_9BRAS; Uncharacterized protein
STRINGXP_010416562.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.10.0NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]