PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g039360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 290aa    MW: 32963.4 Da    PI: 5.647
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g039360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.37.4e-102202581854
                     HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     lF+   ++yp+++e+  LA+++gL+++qV++WF N R +
  Csa16g039360.1 220 LFQHflHPYPNEAEKLVLASETGLSKNQVSNWFINARVR 258
                     5775569******************************98 PP
2BELL100.51.3e-3281152172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e++e+++k++kLlsll++V++r+  y++ql++vi++Fe++ag gs+k+Yt lAl+a++rhF +L++ai++q+
  Csa16g039360.1  81 ENHEIHIKITKLLSLLQQVEERFDMYCNQLEQVIAAFEEIAGEGSSKVYTGLALQAMTRHFGSLEEAIISQL 152
                     689******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-1211150IPR006563POX domain
PfamPF075266.3E-2917148IPR006563POX domain
SMARTSM003891.2E-9202266IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-27207268IPR009057Homeodomain-like
CDDcd000866.95E-11208263No hitNo description
SuperFamilySSF466898.13E-18208271IPR009057Homeodomain-like
PfamPF059202.1E-17219258IPR008422Homeobox KN domain
PROSITE profilePS5007111.791221262IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MEEYRVRHEC SSLRGTLLDS RYAKAVQCLV EEVIDIGGRD VELCNDILIQ QLFPGRKRSG  60
FKLSSEIKSE LCSSDFMSLP ENHEIHIKIT KLLSLLQQVE ERFDMYCNQL EQVIAAFEEI  120
AGEGSSKVYT GLALQAMTRH FGSLEEAIIS QLNSVRRRFI NSHQDVPKII SSGLSQLSLF  180
DGNTSSSLQR LGLVQGPQRH AWKPIRGLPE TSVAILRAWL FQHFLHPYPN EAEKLVLASE  240
TGLSKNQVSN WFINARVRLW KPMIEEMYRE EFGDSSDESM QREANDDSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-18208269566Homeobox protein Meis2
3k2a_B4e-18208269566Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g039360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4464320.0DQ446432.1 Arabidopsis thaliana clone pENTR221-At1g75430 homeodomain-containing protein (At1g75430) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471654.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD10.0BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLR0I7660.0R0I766_9BRAS; Uncharacterized protein
STRINGXP_010471654.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.10.0BEL1-like homeodomain 11