PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g038030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 315aa MW: 35213.3 Da PI: 7.1267 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ v+++G g W+t + + g++R++k+c++rw +yl Csa16g038030.1 14 KGVWTQEEDQKLIAHVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++++E++ + +++ +G++ W++Iar+++ gRt++++k++w+++ Csa16g038030.1 67 RGDFSKDEEDSMISLHAIHGNK-WSAIARRLP-GRTDNEIKNHWNTH 111 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.736 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.66E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-9 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.942 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-25 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-10 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009625 | Biological Process | response to insect | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MVRTPCCRAV GLKKGVWTQE EDQKLIAHVQ RHGEGGWRTL PDKAGLKRCG KSCRLRWANY 60 LRPDIKRGDF SKDEEDSMIS LHAIHGNKWS AIARRLPGRT DNEIKNHWNT HIKKRLVKKG 120 IDPLTHKPLL DGAAKLSDHP ETPREKTSVH QEEDDHKSKD NKSSSGSSAR FLNRVANRFC 180 QRINQSVLSD IIGSGSLLTS HTTPTISASE YERSTSSSST PTSSNILTDQ SINVDATSLS 240 SSTCSDSSDI FLYDDIFSDI EDMTIFSSRF SSNVVSHDGE EFLMLDGSCL ENTSFMRELT 300 MILQEDKMET TSVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in glucosinolates biosynthesis. {ECO:0000269|PubMed:23580754, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g038030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471501.2 | 0.0 | PREDICTED: transcription factor MYB122 | ||||
Swissprot | Q9C9C8 | 1e-156 | MY122_ARATH; Transcription factor MYB122 | ||||
TrEMBL | R0GII9 | 1e-165 | R0GII9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010471501.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74080.1 | 1e-149 | myb domain protein 122 |