PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g037740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 403aa    MW: 45042.2 Da    PI: 4.5097
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g037740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.11.5e-072264640
        zf-B_box  6 CpeHeeke..lqlfCedCqqllCedClleeHkg......Htvv 40
                    C+ + +    +++fC  ++ +lC++C  ++H+       H++v
  Csa16g037740.1 22 CDVCMKRSsrASWFCPADDAFLCQSCDASIHSAnslakrHERV 64
                    8888853334*********************657788888876 PP
2CCT67.73.1e-23352395144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY++Kr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Csa16g037740.1 352 REARVLRYRDKRRTRLFAKKIRYEVRKLNAEQRPRIKGRFVKRT 395
                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.31766IPR000315B-box-type zinc finger
SMARTSM003365.8E-111766IPR000315B-box-type zinc finger
CDDcd000212.51E-92266No hitNo description
PfamPF006437.2E-62364IPR000315B-box-type zinc finger
PROSITE profilePS5101715.983352394IPR010402CCT domain
PfamPF062031.9E-17352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVVEVESRAA GVTGGKTAAR GCDVCMKRSS RASWFCPADD AFLCQSCDAS IHSANSLAKR  60
HERVRLQSPS SPELLMKTKA TDKTTSVWYE GFRRKARTPR SKLLQIQDVN NSNDPLVPEL  120
GVEEEEGVFS FSSTDENEES LNCCVPVFDP FSDMVIDDNS FGLVPDGVDI TTSSGDLGEI  180
EKAIMDDDEG LIGFLPFDMD LGEIFMDVES LLEEEHPFLR VKELNSSSAL VKEETNVGFE  240
FDSKDLKRVK DEEEEEVKCE HGGSDQETCE DEDRKASLFL RLDYEAVISA WDNHGSPWET  300
GIKPEFNLDC CLLGGNNTCP SHVMGGFDEL ESAVGSVTRQ QGRDGGGSDV EREARVLRYR  360
DKRRTRLFAK KIRYEVRKLN AEQRPRIKGR FVKRTSLNFD VL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1362378RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g037740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0166622e-57AC016662.7 Arabidopsis thaliana chromosome 1 BAC F2P9 genomic sequence, complete sequence.
GenBankBT0157402e-57BT015740.1 Arabidopsis thaliana At1g73870 mRNA, complete cds.
GenBankBT0201832e-57BT020183.1 Arabidopsis thaliana At1g73870 mRNA, complete cds.
GenBankCP0026842e-57CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471465.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 7
SwissprotQ9C9A90.0COL7_ARATH; Zinc finger protein CONSTANS-LIKE 7
TrEMBLR0IES10.0R0IES1_9BRAS; Uncharacterized protein
STRINGXP_010471465.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1750679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]