PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g036070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 725aa MW: 79162.3 Da PI: 6.4395 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 33 | 88 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p++++r +L+++lgL rq+k+WFqNrR++ k Csa16g036070.1 33 KKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQLK 88 688999**********************************************9877 PP | |||||||
2 | START | 149.8 | 2.4e-47 | 236 | 456 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 +a++a++el+++ +ep+W+k +++n + +f++s + + +ea+r sg+v+m+++ lv ++d + + +a+ +tl+v Csa16g036070.1 236 IALTAMEELLRLLHTNEPLWTKTDgsrDILNLGSYENIFPRSSNrgknhnFLVEASRSSGIVFMNAMALVDMFMDCVKcaeLFPSIIAASKTLAV 330 6899******************99999*************999999****************************99988889999999******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 issg gal+l + e+ +lsplv+ R+ +Ry++q ++g+w++v vS d +q+++ +s++ R +pSg+li++++ng+skvtwveh++ Csa16g036070.1 331 ISSGmggtheGALHLLYEEMEVLSPLVAtREICELRYCQQIEQGSWIVVNVSYDLPQFVS-HSQSFR---FPSGCLIQDMPNGYSKVTWVEHIET 421 ************************************************************.9****9...************************* PP -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++ p h+l+r +++ g+a+ga +w+ tlqr ce+ Csa16g036070.1 422 EEKEPiHELYREMIHDGIAFGAERWLTTLQRMCER 456 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-20 | 15 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.8E-22 | 20 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.155 | 30 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 31 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.25E-19 | 33 | 91 | No hit | No description |
Pfam | PF00046 | 3.1E-17 | 33 | 88 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.603 | 226 | 459 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.88E-30 | 227 | 458 | No hit | No description |
CDD | cd08875 | 2.72E-99 | 230 | 455 | No hit | No description |
SMART | SM00234 | 1.6E-37 | 235 | 456 | IPR002913 | START domain |
Pfam | PF01852 | 7.3E-40 | 236 | 456 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.8E-6 | 288 | 424 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.86E-19 | 477 | 712 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MSFVVGVGGS GSGSGGDVGG SQHHDGSESD RKKKRYHRHT AQQIQRLESS FKECPHPDEK 60 QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK AENDKIRCEN IAIREALKHA 120 ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP 180 LDLSMTSLTG CGPCGHGPSL DFDLLPGSSM SVGHNNLQSQ PNLAISEMDK PLMTDIALTA 240 MEELLRLLHT NEPLWTKTDG SRDILNLGSY ENIFPRSSNR GKNHNFLVEA SRSSGIVFMN 300 AMALVDMFMD CVKCAELFPS IIAASKTLAV ISSGMGGTHE GALHLLYEEM EVLSPLVATR 360 EICELRYCQQ IEQGSWIVVN VSYDLPQFVS HSQSFRFPSG CLIQDMPNGY SKVTWVEHIE 420 TEEKEPIHEL YREMIHDGIA FGAERWLTTL QRMCERFASL SVPASSSRDL GGVIPSPEGK 480 RSMMRLAQRM ISNYCLSVSR SKNIRSTVVS ELNEVGVRVT EHKSPEPNGT VLCAATTFWL 540 PNSPQNVFNF LKDERTRPQW DVLSNGNSVQ EVAHISNGSH PGNCISVLRA SNASQSNNML 600 ILQESSTDSS GALVVYSPVD LAALNIAMSG EDPSYIPLLS SGFAISPDGN GSTSEQGGGA 660 STSSGRSSSN SSGSLITVGF QIMVSNLPSA KLNMESVETV NNLIGTTVHQ IKTALSGPTA 720 STPA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g036070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT003979 | 0.0 | BT003979.1 Arabidopsis thaliana clone RAFL15-10-L20 (R20587) putative homeobox protein (At1g73360) mRNA, complete cds. | |||
GenBank | BT004915 | 0.0 | BT004915.1 Arabidopsis thaliana clone U20587 putative homeobox protein (At1g73360) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471396.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | R0I7H5 | 0.0 | R0I7H5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010471396.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |