PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa16g035040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25677.5 Da PI: 8.907 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.7 | 1.1e-21 | 51 | 99 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k ie + +rqvtfskRr g++KKA ELSvLC+a++ +i fs +++y + Csa16g035040.1 51 KEIEVENRRQVTFSKRRSGLFKKAAELSVLCGAQIGIITFSRCDRIYSF 99 679999************************************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.637 | 43 | 103 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-23 | 43 | 113 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-27 | 43 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-20 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-22 | 53 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-20 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-20 | 80 | 101 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MVDVGEASTI TCLPPAKQKP LRNPNLLANQ KKETTPKKPR TTKGRQKIEI KEIEVENRRQ 60 VTFSKRRSGL FKKAAELSVL CGAQIGIITF SRCDRIYSFG NVDTLVDKYI RKTPVMLRTN 120 PGCDVAAGDE NHDGLMWWER AVESVAEEDM EEYKMALSLL RENLLTRISQ MGNDRTVENL 180 PAFPNEMAMA DWKLSNESLM ARNDRSYLGN DAGLDLAVPF MSPKPRQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa16g035040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471262.1 | 1e-170 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | R0ICD3 | 1e-130 | R0ICD3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010471262.1 | 1e-169 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 1e-113 | M-type_MADS family protein |