PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa16g034840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 295aa    MW: 33094 Da    PI: 6.1798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa16g034840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.23.9e-15123174155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A+ Y+k+L+
  Csa16g034840.1 123 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAISYLKELE 174
                     79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-16121189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-14121178No hitNo description
Gene3DG3DSA:4.10.280.105.4E-14122178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.361122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-11128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MALEAVVYPQ DPFSYISCKD FPFHDLYFQE EEDLDPQDTK NNIKLGQGQE HGFASNNYNG  60
KSGDNSDDYN YNEEDLQWPR DDLPYGSTVD TKNQPPPLDV AVGGRRKRRR TRSCKNKEEI  120
ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PSYAQRGDQA SIVGGAISYL KELEHHLQSI  180
EPPVKTAAED NETGRDQTNT IVAPSSSGPF SDFFAFPLYS SQPTSAAAAE GMAEIEVTMV  240
ESHASLKILA KKRPKQLLKL VASIQSLRLT LLHLNVTTRD DSVLYSISVK GPKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105109RKRRR
2105110RKRRRT
3123134RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa16g034840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4597710.0AJ459771.1 Arabidopsis thaliana mRNA for basic-helix-loop-helix transcription factor (bHLH096 gene).
GenBankBT0038710.0BT003871.1 Arabidopsis thaliana clone RAFL15-42-L08 (R20946) putative bHLH protein (At1g72210) mRNA, complete cds.
GenBankBT0060860.0BT006086.1 Arabidopsis thaliana clone U20946 putative bHLH protein (At1g72210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471242.10.0PREDICTED: transcription factor bHLH96-like isoform X2
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLR0IFC40.0R0IFC4_9BRAS; Uncharacterized protein
STRINGXP_010471241.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-173bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]